JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PSG5_chr19_43162743_43191536	0/0	a0010	335	3	1	1	0	0	1	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0011	335	2	2	0	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0012	335	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0013	81	1	0	1	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0014	335	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0015	335	1	0	1	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0016	335	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0017	335	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0018	335	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0019	335	1	1	0	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0020	335	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0021	335	1	0	1	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	a0022	335	1	0	0	0	0	1	copy fasta	PSG5	chr19	43162743	43191536
PSG6_chr19_42897086_42922894	1/1	a0001	424	189	21	47	91	8	20	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0002	424	136	32	26	51	8	19	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0003	424	26	0	0	22	0	4	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0004	424	13	13	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0005	424	11	0	0	11	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0006	424	7	7	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0007	424	5	4	1	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0008	424	5	4	0	1	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0009	424	3	3	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0010	424	2	0	0	2	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0011	424	2	2	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0012	424	2	0	0	2	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0013	424	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0014	424	1	0	0	0	0	1	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0015	424	1	0	0	1	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0016	424	1	0	0	0	0	1	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0017	424	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0018	424	1	0	0	1	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0019	424	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0020	424	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0021	424	1	0	0	0	0	1	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0022	424	1	0	0	1	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0023	424	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0024	424	1	0	0	1	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	a0025	424	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG7_chr19_42919132_42942207	0/0	a0000	0	1	1	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/1	a0001	97	373	74	65	184	11	38	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	a0002	419	31	8	12	2	3	6	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	a0003	419	4	4	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	a0004	33	1	0	0	0	0	1	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	a0005	97	1	0	0	0	0	1	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	a0006	97	1	0	1	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	1/0	a0007	419	1	0	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	a0008	97	1	1	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	a0009	419	1	1	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	a0010	419	1	1	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG8_chr19_42749233_42770678	1/1	a0001	426	287	22	50	175	6	32	copy fasta	PSG8	chr19	42749233	42770678