JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PSG8_chr19_42749233_42770678	0/0	a0002	426	64	29	13	9	7	6	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0003	124	30	12	9	4	2	3	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0004	426	13	13	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0005	426	10	8	2	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0006	426	6	1	0	2	0	3	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0007	426	3	3	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0008	426	3	3	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0009	124	2	0	2	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0010	426	2	0	0	2	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0011	124	1	1	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0012	124	1	1	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0013	426	1	0	0	0	1	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0014	426	1	1	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0015	124	1	1	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0016	97	1	0	1	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0017	124	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0018	426	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0019	426	1	1	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0020	426	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0021	426	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0022	426	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0023	426	1	0	1	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0024	426	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0025	426	1	0	1	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0026	426	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0027	426	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	a0028	426	1	0	1	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG9_chr19_43248282_43274530	1/1	a0001	426	140	28	39	44	4	23	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0002	426	21	10	0	10	0	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0003	426	8	0	4	0	3	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0004	426	5	0	0	5	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0005	426	5	0	0	2	0	3	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0006	426	4	1	0	0	0	3	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0007	426	4	0	1	0	1	2	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0008	426	3	0	1	0	0	2	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0009	426	3	3	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0010	426	3	0	3	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0011	426	2	0	1	0	1	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0012	426	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0013	426	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0014	426	1	0	0	0	0	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0015	426	1	0	0	0	0	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0016	126	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0017	426	1	0	0	0	1	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0018	426	1	0	0	0	0	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0019	426	1	0	1	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0020	426	1	0	0	0	0	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0021	426	1	0	0	0	0	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0022	426	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0023	426	1	0	0	1	0	0	copy fasta	PSG9	chr19	43248282	43274530