JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PSG9_chr19_43248282_43274530	0/0	a0024	426	1	0	1	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	a0025	426	1	0	1	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSIP1_chr9_15459066_15515970	1/1	a0001	530	290	79	44	117	10	38	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	a0002	530	6	6	0	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	a0003	530	3	0	0	3	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	a0004	530	1	1	0	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSKH1_chr16_67888254_67934676	1/1	a0001	424	230	82	52	54	10	30	copy fasta	PSKH1	chr16	67888254	67934676
PSKH2_chr8_86042109_86074668	1/1	a0001	385	224	32	59	101	8	22	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	a0002	385	130	8	20	77	8	17	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	a0003	385	35	33	2	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	a0004	385	20	18	1	0	0	1	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	a0005	385	2	2	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	a0006	385	2	2	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	a0007	385	2	2	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	a0008	385	1	1	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	a0009	385	1	0	0	0	0	1	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	a0010	385	1	1	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	a0011	385	1	0	0	0	0	1	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	a0012	385	1	1	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSMA1_chr11_14499876_14525386	1/1	a0001	263	412	94	70	186	16	44	copy fasta	PSMA1	chr11	14499876	14525386
PSMA2_chr7_42911861_42937174	1/1	a0001	234	336	90	64	128	14	38	copy fasta	PSMA2	chr7	42911861	42937174
PSMA3_chr14_58239843_58277004	1/1	a0001	255	331	82	56	147	10	34	copy fasta	PSMA3	chr14	58239843	58277004
PSMA3_chr14_58239843_58277004	0/0	a0002	219	1	0	0	1	0	0	copy fasta	PSMA3	chr14	58239843	58277004
PSMA4_chr15_78535444_78557417	1/1	a0001	261	430	88	74	206	14	46	copy fasta	PSMA4	chr15	78535444	78557417
PSMA5_chr1_109394042_109431448	1/1	a0001	241	318	96	66	100	14	40	copy fasta	PSMA5	chr1	109394042	109431448
PSMA6_chr14_35287382_35322493	1/1	a0001	246	379	90	80	154	13	40	copy fasta	PSMA6	chr14	35287382	35322493
PSMA6_chr14_35287382_35322493	0/0	a0002	246	1	0	0	0	1	0	copy fasta	PSMA6	chr14	35287382	35322493
PSMA7_chr20_62131733_62148394	1/1	a0001	248	362	92	78	138	10	42	copy fasta	PSMA7	chr20	62131733	62148394
PSMA8_chr18_26128869_26198355	1/0	a0001	250	267	84	48	110	8	16	copy fasta	PSMA8	chr18	26128869	26198355
PSMA8_chr18_26128869_26198355	0/1	a0002	250	1	0	0	0	0	0	copy fasta	PSMA8	chr18	26128869	26198355
PSMB10_chr16_67929506_67941850	1/1	a0001	273	302	96	62	98	6	38	copy fasta	PSMB10	chr16	67929506	67941850
PSMB10_chr16_67929506_67941850	0/0	a0002	273	1	0	0	0	0	1	copy fasta	PSMB10	chr16	67929506	67941850
PSMB10_chr16_67929506_67941850	0/0	a0003	259	1	0	0	0	0	1	copy fasta	PSMB10	chr16	67929506	67941850
PSMB11_chr14_23037212_23049060	1/1	a0001	300	432	96	76	191	17	50	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	a0002	300	4	0	0	4	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	a0003	300	2	0	2	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	a0004	300	2	1	1	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	a0005	300	2	0	1	0	1	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	a0006	300	1	0	1	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	a0007	300	1	1	0	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	a0008	300	1	0	1	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	a0009	300	1	0	0	1	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB1_chr6_170530120_170558307	1/0	a0001	241	183	70	35	44	10	23	copy fasta	PSMB1	chr6	170530120	170558307
PSMB1_chr6_170530120_170558307	0/1	a0002	241	181	26	29	106	4	15	copy fasta	PSMB1	chr6	170530120	170558307
PSMB2_chr1_35594541_35646526	1/1	a0001	201	299	91	52	116	10	28	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	a0002	201	1	1	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB3_chr17_38747741_38769225	0/0	a0001	205	349	90	59	144	16	40	copy fasta	PSMB3	chr17	38747741	38769225
PSMB3_chr17_38747741_38769225	0/1	a0002	205	78	4	19	50	0	4	copy fasta	PSMB3	chr17	38747741	38769225
PSMB3_chr17_38747741_38769225	0/0	a0003	205	2	2	0	0	0	0	copy fasta	PSMB3	chr17	38747741	38769225
PSMB3_chr17_38747741_38769225	0/0	a0004	205	1	0	0	1	0	0	copy fasta	PSMB3	chr17	38747741	38769225