JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PSMB3_chr17_38747741_38769225	0/0	a0005	205	1	0	0	1	0	0	copy fasta	PSMB3	chr17	38747741	38769225
PSMB4_chr1_151394573_151406937	0/0	a0001	264	291	87	48	120	6	30	copy fasta	PSMB4	chr1	151394573	151406937
PSMB4_chr1_151394573_151406937	0/0	a0002	264	104	7	23	62	2	10	copy fasta	PSMB4	chr1	151394573	151406937
PSMB4_chr1_151394573_151406937	0/0	a0003	264	1	0	1	0	0	0	copy fasta	PSMB4	chr1	151394573	151406937
PSMB5_chr14_23020856_23039900	1/1	a0001	263	397	98	72	164	15	46	copy fasta	PSMB5	chr14	23020856	23039900
PSMB5_chr14_23020856_23039900	0/0	a0002	263	6	1	2	0	1	2	copy fasta	PSMB5	chr14	23020856	23039900
PSMB5_chr14_23020856_23039900	0/0	a0003	263	1	1	0	0	0	0	copy fasta	PSMB5	chr14	23020856	23039900
PSMB6_chr17_4791164_4803495	1/1	a0001	239	427	94	72	199	16	44	copy fasta	PSMB6	chr17	4791164	4803495
PSMB6_chr17_4791164_4803495	0/0	a0002	239	25	0	2	21	0	2	copy fasta	PSMB6	chr17	4791164	4803495
PSMB6_chr17_4791164_4803495	0/0	a0003	239	2	0	0	2	0	0	copy fasta	PSMB6	chr17	4791164	4803495
PSMB7_chr9_124348465_124420442	1/1	a0001	277	260	39	40	145	4	30	copy fasta	PSMB7	chr9	124348465	124420442
PSMB7_chr9_124348465_124420442	0/0	a0002	277	146	55	30	44	4	13	copy fasta	PSMB7	chr9	124348465	124420442
PSMB7_chr9_124348465_124420442	0/0	a0003	277	1	0	0	0	0	1	copy fasta	PSMB7	chr9	124348465	124420442
PSMB7_chr9_124348465_124420442	0/0	a0004	277	1	0	0	1	0	0	copy fasta	PSMB7	chr9	124348465	124420442
PSMB8_chr6_32835717_32849047	0/0	a0001	276	379	82	67	178	15	37	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/1	a0002	276	83	11	20	41	2	8	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	a0003	276	3	2	0	0	0	1	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	a0004	276	1	0	0	0	1	0	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	a0005	276	1	1	0	0	0	0	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	a0006	276	1	0	1	0	0	0	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	a0007	79	1	0	0	1	0	0	copy fasta	PSMB8	chr6	32835717	32849047
PSMB9_chr6_32849192_32864851	0/1	a0001	219	345	65	62	169	11	37	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	a0002	219	90	20	20	40	3	7	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	a0003	219	8	5	2	0	0	1	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	a0004	219	7	2	3	0	2	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	a0005	219	1	0	0	1	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	a0006	219	1	0	0	1	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	a0007	219	1	0	0	1	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	a0008	219	1	0	1	0	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	a0009	219	1	0	0	0	0	1	copy fasta	PSMB9	chr6	32849192	32864851
PSMC1_chr14_90251553_90280429	1/1	a0001	440	390	100	72	166	10	40	copy fasta	PSMC1	chr14	90251553	90280429
PSMC2_chr7_103342643_103374395	1/1	a0001	433	381	85	68	172	12	42	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	0/0	a0002	433	1	1	0	0	0	0	copy fasta	PSMC2	chr7	103342643	103374395
PSMC3IP_chr17_42567310_42582729	1/1	a0001	217	354	82	69	139	18	44	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	a0002	217	32	8	1	20	0	3	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	a0003	217	1	0	0	0	0	1	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	a0004	217	1	0	0	1	0	0	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3_chr11_47413775_47431439	1/1	a0001	439	380	90	72	160	16	40	copy fasta	PSMC3	chr11	47413775	47431439
PSMC4_chr19_39966165_39986764	1/1	a0001	418	358	92	68	138	16	42	copy fasta	PSMC4	chr19	39966165	39986764
PSMC5_chr17_63822431_63837019	1/1	a0001	406	357	88	64	153	12	38	copy fasta	PSMC5	chr17	63822431	63837019
PSMC5_chr17_63822431_63837019	0/0	a0002	406	1	0	0	1	0	0	copy fasta	PSMC5	chr17	63822431	63837019
PSMC6_chr14_52702200_52733590	1/1	a0001	389	398	92	66	190	12	36	copy fasta	PSMC6	chr14	52702200	52733590
PSMD10_chrX_108079207_108096542	1/1	a0001	226	300	73	51	131	13	30	copy fasta	PSMD10	chrX	108079207	108096542
PSMD10_chrX_108079207_108096542	0/0	a0002	226	1	0	0	1	0	0	copy fasta	PSMD10	chrX	108079207	108096542
PSMD11_chr17_32439510_32488319	1/1	a0001	422	289	91	66	82	6	42	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	a0002	422	1	1	0	0	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD12_chr17_67332916_67371577	1/1	a0001	456	396	86	76	172	14	46	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	a0002	456	2	0	0	2	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD13_chr11_231976_257984	0/1	a0001	376	362	83	69	161	11	37	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	1/0	a0002	376	86	15	13	40	5	12	copy fasta	PSMD13	chr11	231976	257984