JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PSMD13_chr11_231976_257984	0/0	a0003	376	1	0	0	0	0	1	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/0	a0004	211	1	0	0	1	0	0	copy fasta	PSMD13	chr11	231976	257984
PSMD14_chr2_161303425_161416717	1/1	a0001	310	268	72	34	116	12	32	copy fasta	PSMD14	chr2	161303425	161416717
PSMD1_chr2_231051867_231177827	1/1	a0001	953	360	85	48	179	10	36	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	a0002	953	2	0	0	2	0	0	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	a0003	953	1	1	0	0	0	0	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	a0004	953	1	0	0	1	0	0	copy fasta	PSMD1	chr2	231051867	231177827
PSMD2_chr3_184294241_184314050	1/1	a0001	908	385	86	60	178	15	44	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	a0002	908	23	3	8	6	2	4	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	a0003	908	4	1	3	0	0	0	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	a0004	908	1	0	0	0	1	0	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	a0005	908	1	0	1	0	0	0	copy fasta	PSMD2	chr3	184294241	184314050
PSMD3_chr17_39975807_40002959	1/1	a0001	534	414	85	74	193	14	46	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	a0002	534	3	3	0	0	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	a0003	534	1	0	0	1	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD4_chr1_151249734_151272479	1/1	a0001	377	420	94	74	190	18	42	copy fasta	PSMD4	chr1	151249734	151272479
PSMD5_chr9_120811053_120847922	1/1	a0001	504	316	90	45	142	10	27	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	a0002	504	38	0	5	32	0	1	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	a0003	504	1	1	0	0	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	a0004	331	1	1	0	0	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD6_chr3_64005551_64028494	1/1	a0001	389	425	92	79	196	18	38	copy fasta	PSMD6	chr3	64005551	64028494
PSMD6_chr3_64005551_64028494	0/0	a0002	389	1	0	1	0	0	0	copy fasta	PSMD6	chr3	64005551	64028494
PSMD7_chr16_74291814_74311288	1/1	a0001	324	444	96	77	205	18	46	copy fasta	PSMD7	chr16	74291814	74311288
PSMD7_chr16_74291814_74311288	0/0	a0002	324	2	0	0	2	0	0	copy fasta	PSMD7	chr16	74291814	74311288
PSMD7_chr16_74291814_74311288	0/0	a0003	324	1	0	1	0	0	0	copy fasta	PSMD7	chr16	74291814	74311288
PSMD7_chr16_74291814_74311288	0/0	a0004	324	1	0	0	1	0	0	copy fasta	PSMD7	chr16	74291814	74311288
PSMD8_chr19_38369571_38388824	1/1	a0001	350	418	82	78	198	16	42	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	a0002	350	3	3	0	0	0	0	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	a0003	350	1	0	0	0	0	1	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	a0004	350	1	1	0	0	0	0	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	a0005	350	1	0	0	0	0	1	copy fasta	PSMD8	chr19	38369571	38388824
PSMD9_chr12_121883790_121923297	0/1	a0001	223	202	67	24	78	7	25	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	a0002	223	110	3	29	56	7	15	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	1/0	a0003	223	48	5	13	21	2	6	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	a0004	223	13	10	3	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	a0005	223	7	0	0	7	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	a0006	223	7	0	0	7	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	a0007	223	5	0	0	5	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	a0008	223	4	0	0	4	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	a0009	223	1	0	1	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	a0010	223	1	1	0	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSME1_chr14_24131194_24143962	1/1	a0001	249	418	96	82	178	16	44	copy fasta	PSME1	chr14	24131194	24143962
PSME2_chr14_24138365_24151610	0/1	a0001	239	417	96	75	184	18	43	copy fasta	PSME2	chr14	24138365	24151610
PSME2_chr14_24138365_24151610	1/0	a0002	239	3	0	1	0	0	1	copy fasta	PSME2	chr14	24138365	24151610
PSME3IP1_chr16_57147466_57191039	1/1	a0001	254	364	86	60	162	14	40	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3_chr17_42828397_42848760	1/1	a0001	254	264	88	54	68	10	42	copy fasta	PSME3	chr17	42828397	42848760
PSME4_chr2_53859069_53975993	1/0	a0001	1843	172	63	32	47	11	18	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/1	a0002	1843	130	15	18	72	3	21	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0003	1843	57	6	4	47	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0004	1843	8	0	6	1	0	1	copy fasta	PSME4	chr2	53859069	53975993