JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PSME4_chr2_53859069_53975993	0/0	a0005	1843	3	2	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0006	1843	2	0	0	2	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0007	1843	2	2	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0008	1843	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0009	1843	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0010	1843	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0011	1843	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0012	1843	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0013	1843	1	0	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0014	1843	1	0	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0015	1843	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0016	1843	1	0	0	1	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	a0017	1843	1	0	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSMF1_chr20_1113602_1177246	0/0	a0001	271	223	68	48	61	15	31	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	a0002	271	71	0	12	49	3	7	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	a0003	271	22	14	2	6	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	a0004	271	7	7	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	a0005	271	3	3	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMG1_chr21_39169769_39188451	1/1	a0001	288	385	83	63	181	18	38	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	a0002	288	3	3	0	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	a0003	288	1	1	0	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	a0004	288	1	1	0	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	a0005	288	1	0	0	1	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	a0006	288	1	0	1	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG2_chr18_12698042_12730740	1/1	a0001	264	390	89	70	171	12	46	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	a0002	264	7	0	0	7	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	a0003	264	1	0	0	1	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	a0004	264	1	1	0	0	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	a0005	264	1	0	0	1	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	a0006	264	1	1	0	0	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	a0007	264	1	1	0	0	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG3_chr7_1562332_1575032	1/1	a0001	122	365	90	76	141	14	42	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	a0002	122	2	0	2	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	a0003	122	1	0	0	1	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG4_chr6_3253947_3273049	1/1	a0001	123	410	91	69	188	16	44	copy fasta	PSMG4	chr6	3253947	3273049
PSMG4_chr6_3253947_3273049	0/0	a0002	123	2	1	1	0	0	0	copy fasta	PSMG4	chr6	3253947	3273049
PSORS1C1_chr6_31109800_31145092	0/1	a0001	152	248	44	52	108	11	32	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	a0002	152	64	19	1	42	1	1	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	a0003	63	34	14	9	6	1	4	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	a0004	41	29	11	11	6	0	1	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	a0005	152	29	0	1	26	0	2	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	a0006	41	28	0	0	22	0	6	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	a0007	152	6	1	4	0	0	1	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	a0008	152	5	1	2	0	1	1	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	a0009	152	2	2	0	0	0	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	a0010	152	2	0	0	0	2	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	a0011	152	2	2	0	0	0	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C2_chr6_31132534_31144066	0/1	a0001	136	383	87	63	178	17	37	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	a0002	136	21	0	10	8	1	2	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	a0003	136	15	0	0	15	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066