JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ASTL_chr2_96117818_96143502	0/0	a0007	431	1	0	0	0	0	1	copy fasta	ASTL	chr2	96117818	96143502
ASTL_chr2_96117818_96143502	0/0	a0008	431	1	1	0	0	0	0	copy fasta	ASTL	chr2	96117818	96143502
ASTN1_chr1_176856067_177169712	0/1	a0001	1294	79	49	11	8	4	6	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	1/0	a0002	1294	26	10	8	4	1	2	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	a0003	1294	5	1	1	2	1	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	a0004	1294	1	0	0	1	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN1_chr1_176856067_177169712	0/0	a0005	1294	1	0	0	1	0	0	copy fasta	ASTN1	chr1	176856067	177169712
ASTN2_chr9_116418112_117420057	1/1	a0001	1339	92	44	25	11	5	5	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	a0002	1340	4	4	0	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	a0003	1339	2	0	0	0	1	1	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	a0004	1339	1	0	0	0	0	1	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	a0005	1339	1	0	0	1	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	a0006	1339	1	0	0	0	0	1	copy fasta	ASTN2	chr9	116418112	117420057
ASTN2_chr9_116418112_117420057	0/0	a0007	1339	1	0	1	0	0	0	copy fasta	ASTN2	chr9	116418112	117420057
ASXL1_chr20_32353331_32444319	1/1	a0001	1541	215	61	48	70	11	23	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0002	1541	21	1	2	18	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0003	1541	11	11	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0004	1541	8	0	3	4	0	1	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0005	1541	6	5	1	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0006	1541	5	5	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0007	1541	4	0	2	0	1	1	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0008	1541	4	4	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0009	1541	2	0	0	2	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0010	1541	1	0	0	1	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0011	1541	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0012	1541	1	0	0	0	0	1	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0013	1541	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0014	1541	1	1	0	0	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL1_chr20_32353331_32444319	0/0	a0015	1541	1	0	0	1	0	0	copy fasta	ASXL1	chr20	32353331	32444319
ASXL2_chr2_25728753_25883487	1/1	a0001	1435	200	68	50	45	7	28	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	a0002	1435	12	5	4	0	0	3	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	a0003	1435	2	2	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	a0004	1435	2	0	1	0	1	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	a0005	1435	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	a0006	1435	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	a0007	1435	1	1	0	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	a0008	1435	1	0	0	0	0	1	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	a0009	1435	1	0	1	0	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL2_chr2_25728753_25883487	0/0	a0010	1435	1	0	0	1	0	0	copy fasta	ASXL2	chr2	25728753	25883487
ASXL3_chr18_33573219_33756195	0/1	a0001	2248	137	50	22	45	2	17	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	1/0	a0002	2248	50	12	14	10	4	9	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	a0003	2248	8	8	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	a0004	2248	7	6	1	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	a0005	2248	4	1	1	1	0	1	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	a0006	2248	3	2	1	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	a0007	2248	2	2	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	a0008	2248	1	0	1	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	a0009	2248	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	a0010	2248	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	a0011	2248	1	0	0	0	0	1	copy fasta	ASXL3	chr18	33573219	33756195