JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PSORS1C2_chr6_31132534_31144066	0/0	a0004	127	11	2	4	0	0	5	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	a0005	136	10	1	1	8	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	a0006	136	8	1	0	6	0	1	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	a0007	136	6	4	0	1	0	1	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	a0008	136	4	1	1	0	0	2	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	a0009	136	1	0	1	0	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	a0010	136	1	0	1	0	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	a0011	32	1	0	1	0	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSPC1_chr13_19697500_19787945	1/1	a0001	523	257	91	62	60	14	28	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	a0002	523	1	1	0	0	0	0	copy fasta	PSPC1	chr13	19697500	19787945
PSPH_chr7_56006064_56056444	1/1	a0001	225	385	88	72	173	16	34	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	a0002	225	5	5	0	0	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	a0003	225	1	1	0	0	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	a0004	225	1	0	0	1	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPN_chr19_6370148_6380933	1/1	a0001	156	373	86	71	166	14	34	copy fasta	PSPN	chr19	6370148	6380933
PSPN_chr19_6370148_6380933	0/0	a0002	156	3	3	0	0	0	0	copy fasta	PSPN	chr19	6370148	6380933
PSPN_chr19_6370148_6380933	0/0	a0003	156	2	0	0	2	0	0	copy fasta	PSPN	chr19	6370148	6380933
PSPN_chr19_6370148_6380933	0/0	a0004	156	1	0	1	0	0	0	copy fasta	PSPN	chr19	6370148	6380933
PSPN_chr19_6370148_6380933	0/0	a0005	156	1	1	0	0	0	0	copy fasta	PSPN	chr19	6370148	6380933
PSRC1_chr1_109274556_109288145	1/1	a0001	333	429	96	77	188	18	48	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	a0002	333	3	3	0	0	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	a0003	333	3	0	3	0	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	a0004	48	1	0	0	1	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	a0005	333	1	1	0	0	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	a0006	333	1	0	0	1	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSTK_chr10_122975401_122995390	1/1	a0001	358	171	31	24	91	2	21	copy fasta	PSTK	chr10	122975401	122995390
PSTK_chr10_122975401_122995390	0/0	a0002	358	170	59	28	65	6	12	copy fasta	PSTK	chr10	122975401	122995390
PSTK_chr10_122975401_122995390	0/0	a0003	358	72	6	20	28	6	12	copy fasta	PSTK	chr10	122975401	122995390
PSTK_chr10_122975401_122995390	0/0	a0004	358	2	0	0	1	0	1	copy fasta	PSTK	chr10	122975401	122995390
PSTK_chr10_122975401_122995390	0/0	a0005	358	1	0	0	1	0	0	copy fasta	PSTK	chr10	122975401	122995390
PSTPIP2_chr18_45978536_46077260	1/1	a0001	334	185	36	41	74	7	25	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	a0002	334	131	54	13	54	3	7	copy fasta	PSTPIP2	chr18	45978536	46077260
PTAFR_chr1_28142166_28181690	1/1	a0001	342	267	80	44	86	16	39	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	a0002	342	25	0	0	24	0	1	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	a0003	342	11	9	2	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	a0004	342	2	2	0	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	a0005	342	1	1	0	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAR1_chr9_69704525_69765011	1/1	a0001	402	378	81	52	185	10	48	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	a0002	402	8	7	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	a0003	402	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	a0004	402	1	0	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTBP1_chr19_792452_817312	1/1	a0001	557	383	90	81	145	18	47	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	a0002	557	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	a0003	557	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	a0004	557	1	0	0	0	0	1	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	a0005	557	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	a0006	557	1	0	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP2_chr1_96716784_96820049	1/1	a0001	531	364	86	64	162	14	36	copy fasta	PTBP2	chr1	96716784	96820049
PTBP3_chr9_112213435_112338619	1/1	a0001	524	340	74	62	154	14	34	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	a0002	524	1	0	0	1	0	0	copy fasta	PTBP3	chr9	112213435	112338619