JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTBP3_chr9_112213435_112338619	0/0	a0003	524	1	0	0	1	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTCD1_chr7_99411739_99443798	1/1	a0001	700	343	78	57	157	15	34	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0002	700	12	4	1	6	1	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0003	700	5	5	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0004	700	4	3	1	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0005	700	3	3	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0006	700	3	0	0	3	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0007	700	1	0	1	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0008	128	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0009	700	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0010	700	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0011	700	1	0	0	0	0	1	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0012	700	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0013	700	1	0	0	0	0	1	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0014	700	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0015	700	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	a0016	700	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD2_chr5_72315373_72373395	1/1	a0001	388	327	82	60	131	14	38	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	a0002	388	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD3_chr2_86101235_86147157	1/1	a0001	689	328	71	70	138	10	37	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	a0002	689	50	0	0	46	0	4	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	a0003	689	15	15	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	a0004	689	1	0	0	0	0	1	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	a0005	689	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	a0006	689	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	a0007	689	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	a0008	689	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCH1_chr9_95437980_95514266	1/0	a0001	1447	152	53	28	45	8	17	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/1	a0002	1447	84	18	12	44	4	5	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0003	1447	24	9	0	13	0	2	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0004	1447	7	0	0	6	0	1	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0005	1447	4	4	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0006	1447	2	0	0	2	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0007	1447	2	0	0	2	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0008	1447	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0009	1447	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0010	1447	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0011	1447	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0012	1447	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0013	1447	1	0	0	0	0	1	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0014	1447	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0015	1447	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	a0016	1447	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95521971	1/0	a0001	1446	131	36	28	45	6	15	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/1	a0002	1446	86	15	13	48	4	5	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	a0003	1446	25	8	0	15	0	2	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	a0004	1446	15	14	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	a0005	1446	6	0	0	5	0	1	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	a0006	1446	4	4	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	a0007	1446	2	0	0	2	0	0	copy fasta	PTCH1	chr9	95437980	95521971