JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTCH1_chr9_95437980_95521971	0/0	a0008	1446	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	a0009	1446	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	a0010	1446	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	a0011	1446	1	0	0	0	0	1	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	a0012	1446	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	a0013	1446	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	a0014	1446	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	a0015	1446	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	a0016	1446	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH2_chr1_44816938_44848253	1/1	a0001	1203	329	86	53	137	16	35	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	a0002	1203	33	0	6	26	0	1	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	a0003	1203	1	0	0	0	0	1	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	a0004	1203	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	a0005	1203	1	0	0	0	0	1	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	a0006	1203	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	a0007	1203	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	a0008	1203	1	0	1	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	a0009	1203	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	a0010	1203	1	0	0	1	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCHD1_chrX_23329849_23409374	1/1	a0001	888	297	74	49	135	5	32	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD4_chr6_47851673_48116197	1/1	a0001	843	179	65	36	40	12	24	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	a0002	843	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	a0003	843	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	a0004	843	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCRA_chr6_42911053_42930838	1/1	a0001	281	324	42	60	178	10	32	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	a0002	281	62	33	15	6	4	4	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	a0003	281	12	12	0	0	0	0	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	a0004	281	6	5	1	0	0	0	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	a0005	281	3	3	0	0	0	0	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	a0006	281	3	0	2	0	0	1	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	a0007	281	1	0	0	0	0	1	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	a0008	281	1	1	0	0	0	0	copy fasta	PTCRA	chr6	42911053	42930838
PTDSS1_chr8_96256902_96341995	1/1	a0001	473	254	83	56	72	12	29	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	a0002	473	7	7	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	a0003	473	1	0	0	0	0	1	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS2_chr11_445279_496399	1/1	a0001	487	319	95	64	108	15	35	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	a0002	487	17	0	16	0	1	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	a0003	487	8	0	5	2	0	1	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	a0004	487	1	0	1	0	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	a0005	487	1	1	0	0	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTEN_chr10_87858625_87976930	1/1	a0001	403	322	78	60	152	8	22	copy fasta	PTEN	chr10	87858625	87976930
PTER_chr10_16432010_16518745	1/1	a0001	349	375	86	52	184	11	40	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	a0002	349	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	a0003	349	1	0	0	0	1	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	a0004	349	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTF1A_chr10_23187312_23199245	0/0	a0001	328	259	55	38	125	10	31	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	1/1	a0002	328	136	40	34	41	6	13	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	a0003	328	10	0	0	6	0	4	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	a0004	328	3	3	0	0	0	0	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	a0005	328	1	0	0	1	0	0	copy fasta	PTF1A	chr10	23187312	23199245