JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTF1A_chr10_23187312_23199245	0/0	a0006	328	1	0	0	1	0	0	copy fasta	PTF1A	chr10	23187312	23199245
PTGDR2_chr11_60845933_60860950	0/1	a0001	395	390	84	75	170	16	44	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	1/0	a0002	395	7	6	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	a0003	396	4	4	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	a0004	395	1	0	0	1	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	a0005	395	1	0	0	1	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	a0006	395	1	1	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	a0007	395	1	0	1	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	a0008	395	1	1	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR_chr14_52262698_52281724	1/1	a0001	359	424	90	80	193	18	41	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	a0002	359	5	4	1	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	a0003	176	3	3	0	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	a0004	359	2	0	1	0	0	1	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	a0005	359	1	0	0	1	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	a0006	359	1	1	0	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	a0007	359	1	0	0	1	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	a0008	359	1	0	0	1	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDS_chr9_136972504_136986742	1/1	a0001	190	380	94	70	154	14	46	copy fasta	PTGDS	chr9	136972504	136986742
PTGDS_chr9_136972504_136986742	0/0	a0002	190	2	0	0	2	0	0	copy fasta	PTGDS	chr9	136972504	136986742
PTGER1_chr19_14467466_14480354	1/1	a0001	402	361	49	80	168	18	44	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	a0002	402	40	40	0	0	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	a0003	369	1	0	0	1	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	a0004	402	1	1	0	0	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	a0005	402	1	0	0	1	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	a0006	402	1	0	0	1	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	a0007	402	1	1	0	0	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	a0008	402	1	0	0	1	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	a0009	402	1	1	0	0	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER2_chr14_52309312_52333598	1/1	a0001	358	416	90	74	194	14	42	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	a0002	358	2	0	2	0	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER3_chr1_70965782_71052816	1/1	a0001	390	360	81	61	164	14	38	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	a0002	390	7	0	2	5	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	a0003	390	2	1	1	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	a0004	390	1	0	0	1	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	a0005	225	1	1	0	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	a0006	390	1	1	0	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER4_chr5_40674915_40698735	1/1	a0001	488	402	88	81	169	16	46	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	a0002	488	1	0	0	1	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	a0003	488	1	0	1	0	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	a0004	488	1	1	0	0	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	a0005	488	1	1	0	0	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGES2_chr9_128115693_128132729	1/1	a0001	377	337	77	64	144	13	37	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	a0002	377	13	1	9	0	1	2	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	a0003	377	12	11	1	0	0	0	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	a0004	377	2	0	0	2	0	0	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	a0005	377	1	0	0	0	0	1	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	a0006	377	1	1	0	0	0	0	copy fasta	PTGES2	chr9	128115693	128132729
PTGES3L_chr17_42963103_42985080	1/1	a0001	156	286	52	62	116	15	39	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	a0002	156	27	15	8	0	1	3	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	a0003	156	16	16	0	0	0	0	copy fasta	PTGES3L	chr17	42963103	42985080