JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTGIS_chr20_49498874_49573137	0/0	a0011	500	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	a0012	500	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	a0013	500	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	a0014	500	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGR1_chr9_111557567_111604647	0/1	a0001	329	237	52	38	108	7	31	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	1/0	a0002	329	166	40	36	71	7	11	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	0/0	a0003	329	2	0	0	0	0	2	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	0/0	a0004	329	1	0	0	1	0	0	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	0/0	a0005	329	1	0	0	1	0	0	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	0/0	a0006	329	1	0	0	1	0	0	copy fasta	PTGR1	chr9	111557567	111604647
PTGR2_chr14_73846831_73890726	1/1	a0001	351	418	93	78	183	18	44	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	a0002	351	1	0	0	1	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	a0003	351	1	1	0	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR3_chr18_75190113_75214139	1/1	a0001	377	422	91	73	193	14	49	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	a0002	377	4	0	0	4	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	a0003	377	2	2	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	a0004	377	2	0	1	0	0	1	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	a0005	377	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	a0006	377	1	0	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	a0007	377	1	0	0	1	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	a0008	363	1	0	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGS1_chr9_122366024_122400703	0/1	a0001	599	279	82	52	110	6	28	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	1/0	a0002	599	23	0	3	5	4	10	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	a0003	599	16	13	2	0	1	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	a0004	599	5	0	5	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	a0005	599	4	3	1	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	a0006	599	1	0	0	0	1	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	a0007	599	1	0	1	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	a0008	599	1	0	0	1	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	a0009	599	1	1	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	a0010	599	1	1	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS2_chr1_186666791_186685423	1/1	a0001	604	411	87	80	187	16	39	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	a0002	604	12	7	0	0	0	5	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	a0003	604	4	0	0	4	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	a0004	604	4	0	0	4	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	a0005	604	1	0	0	1	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	a0006	604	1	0	0	1	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	a0007	604	1	0	0	1	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTH1R_chr3_46872721_46908799	1/1	a0001	593	352	91	65	141	14	39	copy fasta	PTH1R	chr3	46872721	46908799
PTH1R_chr3_46872721_46908799	0/0	a0002	593	1	1	0	0	0	0	copy fasta	PTH1R	chr3	46872721	46908799
PTH1R_chr3_46872721_46908799	0/0	a0003	593	1	0	0	1	0	0	copy fasta	PTH1R	chr3	46872721	46908799
PTH1R_chr3_46872721_46908799	0/0	a0004	593	1	0	0	0	0	1	copy fasta	PTH1R	chr3	46872721	46908799
PTH1R_chr3_46872721_46908799	0/0	a0005	593	1	0	1	0	0	0	copy fasta	PTH1R	chr3	46872721	46908799
PTH2R_chr2_208401792_208499506	1/1	a0001	550	281	79	30	126	11	33	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	a0002	550	5	5	0	0	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	a0003	550	3	0	2	0	1	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	a0004	550	2	0	0	2	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	a0005	550	1	0	0	0	0	1	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	a0006	81	1	0	0	0	0	1	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	a0007	550	1	0	0	0	0	1	copy fasta	PTH2R	chr2	208401792	208499506