JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTH2_chr19_49417419_49428441	1/1	a0001	100	436	85	80	205	15	49	copy fasta	PTH2	chr19	49417419	49428441
PTH2_chr19_49417419_49428441	0/0	a0002	101	4	3	0	0	1	0	copy fasta	PTH2	chr19	49417419	49428441
PTH2_chr19_49417419_49428441	0/0	a0003	100	1	1	0	0	0	0	copy fasta	PTH2	chr19	49417419	49428441
PTH2_chr19_49417419_49428441	0/0	a0004	100	1	1	0	0	0	0	copy fasta	PTH2	chr19	49417419	49428441
PTH2_chr19_49417419_49428441	0/0	a0005	100	1	0	0	0	0	1	copy fasta	PTH2	chr19	49417419	49428441
PTH2_chr19_49417419_49428441	0/0	a0006	100	1	0	0	1	0	0	copy fasta	PTH2	chr19	49417419	49428441
PTHLH_chr12_27953084_27977733	1/1	a0001	177	454	94	76	227	14	41	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	a0002	177	1	0	0	0	0	1	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	a0003	177	1	0	0	1	0	0	copy fasta	PTHLH	chr12	27953084	27977733
PTH_chr11_13487054_13500997	1/1	a0001	115	424	94	70	194	18	46	copy fasta	PTH	chr11	13487054	13500997
PTK2B_chr8_27320552_27464386	1/0	a0001	1009	184	65	34	70	5	9	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/1	a0002	1009	133	25	36	53	5	13	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	a0003	1009	2	0	2	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	a0004	1009	2	0	0	2	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	a0005	1009	1	0	0	1	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	a0006	1009	1	1	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	a0007	1009	1	0	0	1	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	a0008	616	1	0	0	1	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	a0009	1009	1	0	0	1	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	a0010	1009	1	1	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	a0011	1009	1	0	0	1	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2_chr8_140652900_141006282	1/1	a0001	1096	210	73	42	64	7	22	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	a0002	1096	75	10	11	43	1	10	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	a0003	1096	1	0	1	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	a0004	1096	1	1	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	a0005	1096	1	0	0	1	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	a0006	1096	1	1	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	a0007	1096	1	1	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK6_chr20_63523001_63542376	1/1	a0001	451	328	86	77	101	18	44	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	a0002	451	7	0	0	7	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	a0003	451	2	2	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	a0004	451	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	a0005	451	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	a0006	451	1	0	0	1	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	a0007	451	1	0	0	1	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	a0008	451	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	a0009	451	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	a0010	451	1	0	1	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK7_chr6_43071314_43166715	1/0	a0001	1070	250	65	55	95	4	30	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	a0002	1070	8	8	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/1	a0003	1070	8	5	1	1	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	a0004	1070	2	0	0	2	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	a0005	1070	1	0	0	1	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	a0006	1070	1	0	0	1	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	a0007	1070	1	1	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	a0008	1070	1	1	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTMA_chr2_231703525_231718551	1/1	a0001	110	392	92	72	162	16	48	copy fasta	PTMA	chr2	231703525	231718551
PTMS_chr12_6761363_6775952	1/1	a0001	102	452	94	84	212	16	44	copy fasta	PTMS	chr12	6761363	6775952
PTN_chr7_137222341_137348733	1/1	a0001	168	295	88	50	112	10	33	copy fasta	PTN	chr7	137222341	137348733
PTN_chr7_137222341_137348733	0/0	a0002	168	1	0	0	0	0	1	copy fasta	PTN	chr7	137222341	137348733