JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTPN13_chr4_86589315_86820161	0/0	a0014	2485	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0015	2485	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0016	2485	1	0	1	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0017	2485	1	0	0	1	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0018	2485	1	0	1	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0019	2485	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0020	2485	1	0	0	0	0	1	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0021	2485	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0022	2485	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN14_chr1_214343700_214556602	1/1	a0001	1187	233	60	45	90	11	25	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	a0002	1187	15	13	2	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	a0003	1187	6	4	0	0	0	2	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	a0004	1187	5	5	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	a0005	1187	3	3	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	a0006	1187	2	1	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	a0007	1187	2	0	0	0	1	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	a0008	1187	2	1	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	a0009	1187	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	a0010	1187	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	a0011	1187	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	a0012	1187	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN18_chr2_130351056_130380405	1/1	a0001	460	210	34	37	96	11	30	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	a0002	458	128	40	19	57	5	7	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	a0003	458	15	14	1	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	a0004	458	7	6	1	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	a0005	460	7	0	0	7	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	a0006	458	4	4	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	a0007	458	2	0	0	2	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	a0008	460	1	0	0	0	0	1	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	a0009	458	1	0	1	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	a0010	460	1	0	0	1	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	a0011	460	1	0	0	1	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	a0012	458	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	a0013	460	1	0	1	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	a0014	458	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN1_chr20_50505383_50590241	1/1	a0001	435	335	86	78	128	10	31	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	a0002	435	1	0	0	0	0	1	copy fasta	PTPN1	chr20	50505383	50590241
PTPN20_chr10_46906428_47007322	1/1	a0001	420	276	55	55	111	18	35	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	a0002	420	20	1	0	17	0	2	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	a0003	420	7	6	1	0	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	a0004	420	2	0	2	0	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	a0005	420	2	0	0	2	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	a0006	420	1	0	0	0	0	1	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	a0007	420	1	1	0	0	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	a0008	404	1	1	0	0	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	a0009	420	1	0	0	1	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	a0010	420	1	0	0	1	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN21_chr14_88460778_88560007	1/1	a0001	1174	196	34	35	99	9	17	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	a0002	1174	114	29	22	48	5	10	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	a0003	1174	10	0	0	3	1	6	copy fasta	PTPN21	chr14	88460778	88560007