JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTPN21_chr14_88460778_88560007	0/0	a0004	1174	10	9	1	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	a0005	1174	4	4	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	a0006	1174	3	3	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	a0007	1174	2	2	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	a0008	1174	2	2	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	a0009	1174	1	0	0	1	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	a0010	1174	1	0	0	0	0	1	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	a0011	1174	1	0	1	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	a0012	1174	1	0	1	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	a0013	1174	1	1	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	a0014	1174	1	0	0	1	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	a0015	1174	1	0	0	0	1	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN22_chr1_113808811_113876712	0/1	a0001	807	329	71	56	153	13	35	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	1/0	a0002	807	8	2	2	0	1	2	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	a0003	807	5	0	5	0	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	a0004	807	4	0	2	0	0	2	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	a0005	808	3	3	0	0	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	a0006	807	2	0	0	0	0	2	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	a0007	807	1	0	0	1	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	a0008	807	1	1	0	0	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	a0009	807	1	0	1	0	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	a0010	807	1	0	0	1	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	a0011	807	1	1	0	0	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	a0012	807	1	0	0	0	0	1	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	a0013	807	1	0	0	1	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN23_chr3_47376021_47418435	1/1	a0001	1636	112	40	17	43	3	7	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0002	1149	68	24	11	28	0	5	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0003	1636	58	4	16	25	3	10	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0004	1149	38	5	7	21	1	4	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0005	1080	24	2	7	12	1	2	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0006	1080	12	2	2	5	0	3	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0007	1636	2	0	0	0	0	2	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0008	1636	2	0	0	2	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0009	1636	2	0	0	2	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0010	1149	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0011	1149	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0012	1636	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0013	1149	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0014	1149	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0015	1636	1	0	0	0	0	1	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0016	1636	1	0	1	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0017	1149	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0018	1630	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0019	1636	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0020	1636	1	0	1	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0021	1636	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0022	1627	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	a0023	1636	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN2_chr18_12787152_12889237	1/1	a0001	415	361	89	66	144	16	44	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	a0002	415	5	3	2	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237