JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ASXL3_chr18_33573219_33756195	0/0	a0012	2248	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	a0013	2248	1	0	0	1	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	a0014	2248	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	a0015	2248	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASXL3_chr18_33573219_33756195	0/0	a0016	2248	1	1	0	0	0	0	copy fasta	ASXL3	chr18	33573219	33756195
ASZ1_chr7_117358222_117432493	1/1	a0001	475	216	72	43	67	9	23	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	a0002	475	84	3	4	66	3	8	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	a0003	475	2	2	0	0	0	0	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	a0004	475	1	0	0	0	0	1	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	a0005	475	1	1	0	0	0	0	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	a0006	475	1	0	1	0	0	0	copy fasta	ASZ1	chr7	117358222	117432493
ASZ1_chr7_117358222_117432493	0/0	a0007	475	1	0	0	1	0	0	copy fasta	ASZ1	chr7	117358222	117432493
ATAD1_chr10_87746512_87823226	1/1	a0001	361	357	92	58	157	10	38	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	a0002	361	2	0	0	2	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD1_chr10_87746512_87823226	0/0	a0003	361	1	0	0	1	0	0	copy fasta	ATAD1	chr10	87746512	87823226
ATAD2B_chr2_23743664_23932123	1/1	a0001	1458	224	61	52	67	14	28	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	a0002	1458	11	11	0	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	a0003	1458	3	3	0	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	a0004	1458	2	0	1	0	1	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	a0005	1458	1	0	0	1	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	a0006	1458	1	0	0	1	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	a0007	1458	1	0	0	0	1	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	a0008	1458	1	0	1	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	a0009	1458	1	0	0	1	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2B_chr2_23743664_23932123	0/0	a0010	1458	1	1	0	0	0	0	copy fasta	ATAD2B	chr2	23743664	23932123
ATAD2_chr8_123314850_123401447	1/1	a0001	1390	226	49	53	83	6	33	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	a0002	1392	23	21	1	1	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	a0003	1391	15	13	1	1	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	a0004	1388	4	1	0	2	0	1	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	a0005	1386	2	0	2	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	a0006	1390	1	0	0	0	0	1	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	a0007	1390	1	0	0	1	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	a0008	1390	1	0	0	0	0	1	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	a0009	1390	1	0	1	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	a0010	1390	1	0	0	1	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	a0011	1390	1	1	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	a0012	1390	1	0	0	1	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD2_chr8_123314850_123401447	0/0	a0013	1390	1	1	0	0	0	0	copy fasta	ATAD2	chr8	123314850	123401447
ATAD3A_chr1_1507162_1539685	0/0	a0001	586	304	66	71	113	18	36	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0002	586	87	14	11	52	0	10	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0003	586	4	0	0	4	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0004	586	3	3	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0005	586	3	3	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0006	586	2	2	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0007	586	2	0	0	2	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0008	586	2	2	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0009	586	2	2	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0010	586	2	0	0	2	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0011	586	1	0	0	1	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0012	586	1	0	0	0	0	1	copy fasta	ATAD3A	chr1	1507162	1539685