JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTPN2_chr18_12787152_12889237	0/0	a0003	415	4	2	2	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN3_chr9_109370700_109503307	1/1	a0001	913	159	33	36	67	8	13	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	a0002	913	117	38	22	44	4	9	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	a0003	913	4	4	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	a0004	913	2	1	1	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	a0005	913	2	0	0	2	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	a0006	913	2	1	1	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	a0007	913	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	a0008	821	1	0	0	1	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	a0009	913	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	a0010	913	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN4_chr2_119754922_119989899	1/1	a0001	926	233	69	48	80	6	28	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	a0002	926	13	9	4	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	a0003	926	2	0	0	2	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	a0004	926	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	a0005	926	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	a0006	926	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	a0007	926	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN5_chr11_18722928_18796798	1/0	a0001	565	270	91	33	114	11	20	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/1	a0002	565	107	2	35	47	7	15	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	a0003	565	3	0	0	3	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	a0004	565	2	2	0	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	a0005	565	1	0	1	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	a0006	565	1	0	0	0	0	1	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	a0007	565	1	0	1	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	a0008	565	1	0	0	1	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	a0009	565	1	0	0	1	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	a0010	565	1	1	0	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN6_chr12_6946356_6966316	1/0	a0001	595	382	93	68	162	12	46	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	a0002	595	1	1	0	0	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	a0003	595	1	0	1	0	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	a0004	595	1	0	1	0	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN7_chr1_202142016_202165602	0/0	a0001	360	450	98	86	200	18	48	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	a0002	360	1	0	0	1	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	a0003	360	1	1	0	0	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	a0004	360	1	1	0	0	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	a0005	161	1	0	0	1	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN9_chr15_75458251_75584315	1/1	a0001	593	323	77	55	147	10	32	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	a0002	593	1	0	0	1	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	a0003	593	1	0	1	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	a0004	593	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPRA_chr20_2868481_3043669	1/1	a0001	802	242	24	55	124	12	25	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	a0002	802	105	51	9	38	2	5	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	a0003	802	2	0	0	0	0	2	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	a0004	802	2	2	0	0	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	a0005	802	1	0	0	1	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	a0006	802	1	0	0	1	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	a0007	802	1	1	0	0	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	a0008	802	1	0	0	1	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	a0009	802	1	0	0	1	0	0	copy fasta	PTPRA	chr20	2868481	3043669