JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTPRB_chr12_70510870_70642429	1/1	a0001	2215	64	11	22	20	4	5	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0002	2215	49	17	5	24	2	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0003	2215	39	19	3	14	1	2	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0004	2215	35	10	8	15	0	2	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0005	2215	33	6	5	18	1	3	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0006	2215	17	0	0	14	0	3	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0007	2215	7	3	3	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0008	2215	6	0	0	6	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0009	2215	5	4	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0010	2215	4	1	0	2	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0011	2215	4	0	1	0	0	3	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0012	2215	3	2	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0013	2215	3	0	1	0	1	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0014	2215	2	2	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0015	2215	2	0	0	2	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0016	2215	2	0	0	2	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0017	2215	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0018	2215	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0019	2215	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0020	2215	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0021	2215	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0022	2215	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0023	2215	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0024	2215	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0025	2215	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0026	2215	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0027	2215	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0028	2215	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0029	2215	1	0	0	0	1	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0030	2215	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0031	2215	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0032	2215	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0033	2215	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0034	2215	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0035	2215	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0036	2215	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0037	2215	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0038	2215	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0039	2215	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0040	2215	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	a0041	2215	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRCAP_chr11_67430510_67442682	1/1	a0001	206	372	92	63	162	16	37	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRCAP_chr11_67430510_67442682	0/0	a0002	206	6	0	1	4	0	1	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRC_chr1_198634040_198762476	1/1	a0001	1306	241	64	63	81	8	23	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	a0002	1306	35	1	8	24	0	2	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	a0003	1306	4	4	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	a0004	1306	4	0	1	0	2	1	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	a0005	1306	2	2	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	a0006	1306	2	0	0	2	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	a0007	1306	2	2	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476