JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTPRC_chr1_198634040_198762476	0/0	a0008	1306	2	1	1	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	a0009	1306	1	0	1	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	a0010	1306	1	0	0	1	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	a0011	1306	1	0	0	1	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	a0012	1306	1	0	0	1	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRD_chr9_8309246_10618002	0/0	a0001	1912	30	19	8	0	0	3	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	a0002	1912	1	0	0	0	0	1	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	a0003	1912	1	0	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	a0004	1912	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	a0005	1912	1	0	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRE_chr10_127902103_128090855	1/1	a0001	700	286	88	61	87	12	36	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	a0002	700	13	0	0	13	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	a0003	700	2	1	1	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	a0004	700	1	0	0	0	0	1	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	a0005	700	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	a0006	700	1	0	0	0	0	1	copy fasta	PTPRE	chr10	127902103	128090855
PTPRF_chr1_43525883_43628666	1/0	a0001	1907	19	6	6	2	0	4	copy fasta	PTPRF	chr1	43525883	43628666
PTPRG_chr3_61556571_62302609	0/0	a0001	1445	57	31	14	5	3	4	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	a0002	1445	17	4	3	3	1	6	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	a0003	1445	9	4	1	0	0	4	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	a0004	1445	4	4	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	a0005	1445	2	0	2	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	a0006	1445	2	2	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	a0007	1445	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	a0008	1445	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	a0009	1445	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRH_chr19_55176247_55214501	1/1	a0001	1115	92	6	14	52	3	15	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0002	1115	82	21	23	33	0	5	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0003	1115	38	8	4	19	0	7	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0004	1115	22	4	1	13	0	4	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0005	1115	19	13	0	4	1	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0006	1115	15	1	5	3	4	2	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0007	1115	15	8	3	0	2	2	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0008	1115	11	0	8	0	1	2	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0009	1115	11	1	0	6	1	3	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0010	1115	7	6	0	0	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0011	1115	6	1	1	2	0	2	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0012	1115	6	2	0	4	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0013	1115	4	2	2	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0014	1115	4	1	2	0	1	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0015	1115	4	1	3	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0016	1115	4	4	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0017	1115	3	0	1	0	0	2	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0018	1115	3	1	0	2	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0019	1115	3	2	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0020	1115	2	1	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0021	1115	2	0	1	0	1	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0022	1115	2	2	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0023	1115	1	0	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0024	1115	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501