JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTPRH_chr19_55176247_55214501	0/0	a0025	1115	1	0	0	0	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0026	1115	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0027	1115	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0028	1115	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0029	1115	1	0	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0030	1115	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0031	1115	1	0	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0032	1115	1	0	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0033	1115	1	0	0	0	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0034	1115	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0035	1115	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0036	1115	1	0	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0037	1115	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0038	601	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0039	1115	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0040	1115	1	0	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0041	1115	1	0	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0042	1115	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0043	1115	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0044	1115	1	0	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	a0045	1115	1	1	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRJ_chr11_47975559_48175839	1/1	a0001	1337	81	26	15	22	6	10	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0002	1337	45	13	5	23	1	3	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0003	1337	39	8	9	15	3	4	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0004	1337	14	14	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0005	1337	6	6	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0006	1337	5	5	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0007	1337	5	4	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0008	1337	4	3	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0009	1337	3	0	2	0	0	1	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0010	1337	3	3	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0011	1337	2	2	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0012	1344	1	0	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0013	1337	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0014	1337	1	0	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0015	1337	1	0	1	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0016	1337	1	0	0	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0017	1337	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0018	1337	1	0	0	1	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0019	1337	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRJ_chr11_47975559_48175839	0/0	a0020	1337	1	1	0	0	0	0	copy fasta	PTPRJ	chr11	47975559	48175839
PTPRK_chr6_127963785_128525599	0/1	a0001	1440	52	33	8	4	2	4	copy fasta	PTPRK	chr6	127963785	128525599
PTPRK_chr6_127963785_128525599	0/0	a0002	1440	1	1	0	0	0	0	copy fasta	PTPRK	chr6	127963785	128525599
PTPRM_chr18_7562316_8411856	0/0	a0001	1465	74	56	8	8	2	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	a0002	1465	5	5	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRM_chr18_7562316_8411856	0/0	a0003	1465	1	1	0	0	0	0	copy fasta	PTPRM	chr18	7562316	8411856
PTPRN_chr2_219284623_219314401	1/1	a0001	979	389	72	80	179	14	42	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	a0002	979	19	19	0	0	0	0	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	a0003	979	2	0	0	0	0	2	copy fasta	PTPRN	chr2	219284623	219314401
PTPRN_chr2_219284623_219314401	0/0	a0004	979	2	0	0	2	0	0	copy fasta	PTPRN	chr2	219284623	219314401