JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTPRQ_chr12_80439235_80685273	0/0	a0046	1436	1	0	1	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0047	474	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0048	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0049	2299	1	0	0	0	0	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0050	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0051	2299	1	0	1	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0052	2299	1	0	0	0	0	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0053	2299	1	0	0	0	0	1	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0054	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0055	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0056	2299	1	0	1	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0057	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0058	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0059	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0060	2299	1	0	0	1	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0061	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0062	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0063	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0064	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0065	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0066	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRQ_chr12_80439235_80685273	0/0	a0067	2299	1	1	0	0	0	0	copy fasta	PTPRQ	chr12	80439235	80685273
PTPRR_chr12_70633079_70925738	0/1	a0001	657	102	12	17	55	3	14	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	1/0	a0002	657	63	47	7	5	1	2	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0003	657	9	9	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0004	657	6	4	2	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0005	657	5	5	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0006	657	4	0	1	0	1	2	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0007	657	3	1	2	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0008	657	3	3	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0009	657	2	2	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0010	657	1	1	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0011	657	1	1	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0012	657	1	1	0	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0013	657	1	0	0	0	1	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0014	657	1	0	0	1	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0015	657	1	0	1	0	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRR_chr12_70633079_70925738	0/0	a0016	657	1	0	0	1	0	0	copy fasta	PTPRR	chr12	70633079	70925738
PTPRS_chr19_5200508_5345812	0/1	a0001	1948	265	85	73	56	14	36	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	a0002	1948	2	0	0	0	0	2	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	a0003	1948	1	0	0	1	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	a0004	1948	1	1	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	a0005	1948	1	0	0	1	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	a0006	1948	1	0	0	1	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	1/0	a0007	1948	1	0	0	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	a0008	1948	1	0	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	a0009	1948	1	0	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	a0010	1948	1	0	0	1	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRS_chr19_5200508_5345812	0/0	a0011	1948	1	0	1	0	0	0	copy fasta	PTPRS	chr19	5200508	5345812
PTPRT_chr20_42067756_43194906	0/0	a0001	1441	29	23	4	1	0	1	copy fasta	PTPRT	chr20	42067756	43194906