JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTPRT_chr20_42067756_43194906	0/0	a0002	1441	24	9	7	3	2	3	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	a0003	1441	2	2	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	a0004	1441	2	1	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	a0005	1441	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	a0006	1441	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	a0007	1441	1	0	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	a0008	1441	1	1	0	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRT_chr20_42067756_43194906	0/0	a0009	1441	1	0	1	0	0	0	copy fasta	PTPRT	chr20	42067756	43194906
PTPRU_chr1_29231522_29331800	1/0	a0001	1436	170	56	33	47	10	23	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/1	a0002	1436	101	16	18	51	2	13	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	a0003	1436	13	11	2	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	a0004	1436	2	2	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	a0005	1436	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	a0006	1436	1	0	1	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	a0007	1436	1	0	1	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	a0008	1436	1	0	0	1	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	a0009	1436	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	a0010	1436	1	0	0	1	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	a0011	1436	1	0	0	0	0	1	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	a0012	1436	1	0	0	0	0	1	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	a0013	1436	1	1	0	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRU_chr1_29231522_29331800	0/0	a0014	1436	1	0	1	0	0	0	copy fasta	PTPRU	chr1	29231522	29331800
PTPRZ1_chr7_121868161_122067036	0/0	a0001	2314	85	37	22	14	1	11	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	1/0	a0002	2315	75	5	15	44	1	9	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0003	2314	46	0	9	35	0	2	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0004	2315	33	20	4	6	0	3	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0005	2315	32	3	7	21	0	1	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0006	2315	13	0	0	13	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0007	2315	5	5	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0008	2314	4	2	0	0	0	2	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0009	2315	4	0	3	0	0	1	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0010	2315	3	0	0	3	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0011	2315	1	0	0	1	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0012	2315	1	0	0	0	0	1	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0013	2315	1	0	0	1	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/1	a0014	2315	1	0	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0015	2315	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0016	2314	1	0	1	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0017	2315	1	0	0	1	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0018	2314	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0019	2315	1	0	1	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0020	2315	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0021	2314	1	1	0	0	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTPRZ1_chr7_121868161_122067036	0/0	a0022	2314	1	0	0	1	0	0	copy fasta	PTPRZ1	chr7	121868161	122067036
PTRH1_chr9_127708807_127720663	1/1	a0001	214	336	90	70	120	12	42	copy fasta	PTRH1	chr9	127708807	127720663
PTRH1_chr9_127708807_127720663	0/0	a0002	214	8	0	3	5	0	0	copy fasta	PTRH1	chr9	127708807	127720663
PTRH1_chr9_127708807_127720663	0/0	a0003	214	3	0	0	3	0	0	copy fasta	PTRH1	chr9	127708807	127720663
PTRH1_chr9_127708807_127720663	0/0	a0004	214	1	0	1	0	0	0	copy fasta	PTRH1	chr9	127708807	127720663
PTRH2_chr17_59692308_59712430	1/1	a0001	179	370	98	62	150	10	48	copy fasta	PTRH2	chr17	59692308	59712430
PTRHD1_chr2_24784728_24798391	1/1	a0001	140	403	84	84	185	14	34	copy fasta	PTRHD1	chr2	24784728	24798391