JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTRHD1_chr2_24784728_24798391	0/0	a0002	140	2	0	0	0	0	2	copy fasta	PTRHD1	chr2	24784728	24798391
PTRHD1_chr2_24784728_24798391	0/0	a0003	140	2	0	0	0	2	0	copy fasta	PTRHD1	chr2	24784728	24798391
PTRHD1_chr2_24784728_24798391	0/0	a0004	140	1	0	0	1	0	0	copy fasta	PTRHD1	chr2	24784728	24798391
PTS_chr11_112221428_112238973	1/1	a0001	145	403	93	76	172	14	46	copy fasta	PTS	chr11	112221428	112238973
PTS_chr11_112221428_112238973	0/0	a0002	145	1	1	0	0	0	0	copy fasta	PTS	chr11	112221428	112238973
PTTG1IP2_chr7_90464639_90518397	1/1	a0001	154	366	85	69	163	11	36	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP2_chr7_90464639_90518397	0/0	a0002	154	15	1	5	1	1	7	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP2_chr7_90464639_90518397	0/0	a0003	154	1	0	0	0	0	1	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP2_chr7_90464639_90518397	0/0	a0004	154	1	0	0	0	0	1	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP2_chr7_90464639_90518397	0/0	a0005	154	1	0	0	0	0	1	copy fasta	PTTG1IP2	chr7	90464639	90518397
PTTG1IP_chr21_44844598_44878690	1/1	a0001	180	439	96	77	198	18	48	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	a0002	180	3	0	3	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	a0003	180	1	1	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1IP_chr21_44844598_44878690	0/0	a0004	180	1	1	0	0	0	0	copy fasta	PTTG1IP	chr21	44844598	44878690
PTTG1_chr5_160416855_160433739	1/1	a0001	202	467	95	82	228	18	42	copy fasta	PTTG1	chr5	160416855	160433739
PTTG1_chr5_160416855_160433739	0/0	a0002	202	1	1	0	0	0	0	copy fasta	PTTG1	chr5	160416855	160433739
PTTG2_chr4_37955398_37966128	0/0	a0001	191	349	70	56	185	11	27	copy fasta	PTTG2	chr4	37955398	37966128
PTTG2_chr4_37955398_37966128	1/1	a0002	191	84	25	26	9	5	17	copy fasta	PTTG2	chr4	37955398	37966128
PTTG2_chr4_37955398_37966128	0/0	a0003	191	4	0	0	4	0	0	copy fasta	PTTG2	chr4	37955398	37966128
PTTG2_chr4_37955398_37966128	0/0	a0004	191	1	1	0	0	0	0	copy fasta	PTTG2	chr4	37955398	37966128
PTX3_chr3_157431850_157448633	0/0	a0001	381	340	56	54	183	12	35	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	1/1	a0002	381	96	20	24	32	6	12	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	a0003	381	19	13	0	6	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	a0004	381	5	0	5	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	a0005	381	3	3	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	a0006	381	2	0	2	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	a0007	381	2	2	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	a0008	381	1	1	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	a0009	381	1	0	0	0	0	1	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	a0010	381	1	0	0	1	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	a0011	381	1	1	0	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX3_chr3_157431850_157448633	0/0	a0012	381	1	0	1	0	0	0	copy fasta	PTX3	chr3	157431850	157448633
PTX4_chr16_1480886_1493944	1/0	a0001	478	164	7	47	67	12	30	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0002	478	128	5	8	105	1	9	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0003	478	38	25	4	5	1	3	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0004	478	30	8	7	15	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/1	a0005	478	19	12	4	0	0	2	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0006	478	14	12	2	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0007	478	9	0	0	9	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0008	478	5	5	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0009	478	4	3	1	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0010	478	4	0	3	0	0	1	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0011	478	4	4	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0012	478	3	3	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0013	478	2	0	1	0	0	1	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0014	478	2	2	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0015	478	2	0	0	0	0	2	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0016	478	1	0	0	0	0	1	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0017	478	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0018	478	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944