JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTX4_chr16_1480886_1493944	0/0	a0019	478	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0020	478	1	0	0	0	0	1	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0021	478	1	0	1	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0022	478	1	0	0	1	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0023	478	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0024	478	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0025	111	1	0	0	1	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0026	478	1	0	0	1	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0027	478	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0028	478	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PTX4_chr16_1480886_1493944	0/0	a0029	478	1	1	0	0	0	0	copy fasta	PTX4	chr16	1480886	1493944
PUDP_chrX_7043920_7153153	1/1	a0001	228	185	49	31	77	11	15	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	a0002	228	67	4	11	41	2	9	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	a0003	228	5	0	0	5	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	a0004	54	1	0	0	1	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	a0005	228	1	1	0	0	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUDP_chrX_7043920_7153153	0/0	a0006	228	1	0	0	1	0	0	copy fasta	PUDP	chrX	7043920	7153153
PUF60_chr8_143811344_143834315	0/1	a0001	559	396	90	78	169	14	44	copy fasta	PUF60	chr8	143811344	143834315
PUF60_chr8_143811344_143834315	0/0	a0002	559	1	0	0	1	0	0	copy fasta	PUF60	chr8	143811344	143834315
PUM1_chr1_30926506_31070717	1/1	a0001	1188	332	79	63	136	14	38	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	a0002	1188	1	0	1	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM1_chr1_30926506_31070717	0/0	a0003	1188	1	1	0	0	0	0	copy fasta	PUM1	chr1	30926506	31070717
PUM2_chr2_20243737_20355844	1/1	a0001	1064	358	94	66	144	12	40	copy fasta	PUM2	chr2	20243737	20355844
PUM3_chr9_2799152_2849095	0/1	a0001	648	189	44	29	87	6	22	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	1/0	a0002	648	158	28	28	79	5	17	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0003	648	31	1	5	23	1	1	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0004	648	10	0	6	4	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0005	648	5	5	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0006	648	4	0	0	4	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0007	648	3	2	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0008	648	3	3	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0009	648	2	0	2	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0010	648	2	2	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0011	648	1	0	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0012	648	1	0	1	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0013	648	1	1	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0014	648	1	1	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0015	648	1	0	1	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0016	648	1	1	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0017	648	1	1	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0018	648	1	0	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0019	648	1	0	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0020	648	1	0	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0021	648	1	0	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0022	648	1	0	0	1	0	0	copy fasta	PUM3	chr9	2799152	2849095
PUM3_chr9_2799152_2849095	0/0	a0023	648	1	1	0	0	0	0	copy fasta	PUM3	chr9	2799152	2849095
PURA_chr5_140109109_140130619	1/1	a0001	322	190	62	46	48	12	20	copy fasta	PURA	chr5	140109109	140130619
PURB_chr7_44871299_44890530	1/1	a0001	312	412	88	82	184	14	42	copy fasta	PURB	chr7	44871299	44890530
PURG_chr8_31025850_31038356	1/1	a0001	347	395	96	63	177	18	39	copy fasta	PURG	chr8	31025850	31038356
PURG_chr8_31025850_31038356	0/0	a0002	347	6	0	5	0	0	1	copy fasta	PURG	chr8	31025850	31038356