JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATAD3A_chr1_1507162_1539685	0/0	a0013	586	1	0	1	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0014	586	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0015	586	1	1	0	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0016	586	1	0	0	1	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0017	586	1	0	1	0	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0018	586	1	0	0	1	0	0	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3A_chr1_1507162_1539685	0/0	a0019	586	1	0	0	0	0	1	copy fasta	ATAD3A	chr1	1507162	1539685
ATAD3B_chr1_1466765_1502848	1/1	a0001	648	135	16	40	45	14	18	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0002	648	76	20	7	41	0	8	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0003	648	15	15	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0004	648	10	10	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0005	648	7	0	0	7	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0006	648	5	0	0	0	0	5	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0007	648	3	0	0	3	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0008	648	2	2	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0009	648	2	2	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0010	648	2	0	0	2	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0011	648	2	0	2	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0012	648	2	0	0	0	0	2	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0013	648	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0014	648	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0015	648	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0016	648	1	0	0	0	0	1	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0017	648	1	0	0	0	0	1	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0018	648	1	0	0	0	0	1	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0019	648	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0020	648	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0021	648	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0022	648	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0023	648	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0024	648	1	1	0	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0025	648	1	0	1	0	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0026	648	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3B_chr1_1466765_1502848	0/0	a0027	60	1	0	0	1	0	0	copy fasta	ATAD3B	chr1	1466765	1502848
ATAD3C_chr1_1444689_1475163	1/1	a0001	411	237	53	33	107	12	30	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0002	411	127	16	29	69	3	10	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0003	411	11	11	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0004	411	5	5	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0005	411	4	4	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0006	411	4	4	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0007	411	2	1	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0008	411	2	0	2	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0009	411	2	0	0	0	2	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0010	411	1	0	0	0	0	1	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0011	411	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0012	411	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0013	411	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0014	411	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0015	411	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0016	411	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163