JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PVALEF_chr17_81160507_81188166	1/1	a0001	134	294	35	55	152	15	35	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	a0002	134	100	48	18	20	3	11	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	a0003	134	7	7	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	a0004	134	5	5	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	a0005	134	1	1	0	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVALEF_chr17_81160507_81188166	0/0	a0006	122	1	0	1	0	0	0	copy fasta	PVALEF	chr17	81160507	81188166
PVRIG_chr7_100214949_100226490	0/1	a0001	306	225	70	36	73	11	34	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	1/0	a0002	306	143	12	32	81	2	15	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	a0003	303	15	0	4	10	1	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	a0004	306	3	0	0	0	2	1	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	a0005	306	2	2	0	0	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	a0006	306	1	0	0	1	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	a0007	306	1	1	0	0	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	a0008	306	1	1	0	0	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	a0009	284	1	0	0	1	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	a0010	303	1	0	0	1	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVRIG_chr7_100214949_100226490	0/0	a0011	306	1	0	0	1	0	0	copy fasta	PVRIG	chr7	100214949	100226490
PVR_chr19_44638910_44671162	1/1	a0001	417	313	61	61	139	13	37	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	a0002	417	63	4	12	39	1	7	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	a0003	417	23	22	1	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	a0004	417	3	3	0	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	a0005	417	3	0	1	0	2	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	a0006	417	3	0	0	3	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	a0007	417	1	0	1	0	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	a0008	416	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	a0009	417	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PVR_chr19_44638910_44671162	0/0	a0010	417	1	0	0	1	0	0	copy fasta	PVR	chr19	44638910	44671162
PWP1_chr12_107680799_107718162	1/1	a0001	501	299	78	60	110	13	36	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	a0002	501	24	2	2	15	1	4	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	a0003	501	12	0	0	11	0	1	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	a0004	501	2	2	0	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	a0005	501	1	0	1	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	a0006	501	1	1	0	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	a0007	501	1	1	0	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	a0008	501	1	0	1	0	0	0	copy fasta	PWP1	chr12	107680799	107718162
PWP1_chr12_107680799_107718162	0/0	a0009	501	1	0	0	0	0	1	copy fasta	PWP1	chr12	107680799	107718162
PWP2_chr21_44102399_44136181	0/0	a0001	919	73	43	8	22	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	a0002	919	5	5	0	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	a0003	919	2	2	0	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	a0004	919	1	0	0	1	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	a0005	919	1	1	0	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	a0006	919	1	1	0	0	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWP2_chr21_44102399_44136181	0/0	a0007	919	1	0	0	1	0	0	copy fasta	PWP2	chr21	44102399	44136181
PWWP2A_chr5_160086339_160124450	1/1	a0001	755	340	82	61	143	14	38	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	a0002	755	33	3	3	25	0	2	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	a0003	755	5	5	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	a0004	755	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	a0005	755	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	a0006	755	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	a0007	755	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450