JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PWWP2A_chr5_160086339_160124450	0/0	a0008	755	1	1	0	0	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2A_chr5_160086339_160124450	0/0	a0009	749	1	0	0	1	0	0	copy fasta	PWWP2A	chr5	160086339	160124450
PWWP2B_chr10_132392200_132422859	0/0	a0001	590	140	29	22	65	9	15	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	1/0	a0002	590	127	18	29	55	4	20	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/1	a0003	590	76	39	21	13	0	2	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	a0004	590	23	7	9	1	3	3	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	a0005	590	4	4	0	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	a0006	590	1	0	1	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	a0007	590	1	0	0	1	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	a0008	590	1	1	0	0	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP2B_chr10_132392200_132422859	0/0	a0009	590	1	0	0	1	0	0	copy fasta	PWWP2B	chr10	132392200	132422859
PWWP3A_chr19_1349959_1383429	0/0	a0001	710	258	66	49	96	10	37	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	1/1	a0002	710	138	24	11	87	5	9	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	a0003	710	2	0	0	0	0	2	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	a0004	710	2	0	1	0	1	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	a0005	710	2	0	0	2	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	a0006	710	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	a0007	710	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	a0008	710	1	0	1	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	a0009	710	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	a0010	710	1	0	1	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	a0011	710	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	a0012	710	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	a0013	710	1	1	0	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	a0014	710	1	0	0	1	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3A_chr19_1349959_1383429	0/0	a0015	710	1	0	1	0	0	0	copy fasta	PWWP3A	chr19	1349959	1383429
PWWP3B_chrX_106163305_106213956	1/1	a0001	696	236	63	44	94	9	24	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	a0002	696	6	6	0	0	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	a0003	696	3	1	2	0	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	a0004	696	1	0	1	0	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	a0005	696	1	0	0	1	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP3B_chrX_106163305_106213956	0/0	a0006	696	1	0	0	1	0	0	copy fasta	PWWP3B	chrX	106163305	106213956
PWWP4_chrX_153261152_153284145	0/0	a0001	2061	29	0	9	15	1	4	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0002	2061	24	4	6	7	1	6	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0003	2061	12	5	6	0	0	1	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0004	2061	11	7	2	1	1	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0005	2061	7	7	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0006	2060	4	0	0	3	1	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0007	2060	3	3	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0008	2061	3	0	1	0	2	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0009	2061	2	0	0	0	0	2	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0010	2060	2	0	0	2	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0011	2061	2	0	0	0	0	2	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0012	2061	2	0	1	0	1	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0013	2060	2	2	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0014	2061	2	0	2	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0015	2061	2	0	1	0	0	1	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0016	545	1	0	1	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0017	2061	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0018	602	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145