JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PWWP4_chrX_153261152_153284145	0/0	a0019	486	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0020	2061	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0021	2060	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0022	2060	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0023	2061	1	0	0	0	0	1	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0024	2061	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0025	2061	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0026	2061	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0027	2061	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0028	2061	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0029	2061	1	0	1	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0030	2061	1	0	0	0	0	1	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0031	2061	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0032	2061	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0033	2046	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0034	1879	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0035	2060	1	0	0	0	0	1	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0036	1805	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0037	2061	1	0	1	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0038	2061	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0039	2061	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0040	2061	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0041	2061	1	0	1	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0042	2007	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0043	2061	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0044	486	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0045	486	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0046	286	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0047	286	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0048	2061	1	1	0	0	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PWWP4_chrX_153261152_153284145	0/0	a0049	31	1	0	0	1	0	0	copy fasta	PWWP4	chrX	153261152	153284145
PXDC1_chr6_3717619_3756713	0/1	a0001	231	260	67	38	119	10	25	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	1/0	a0002	231	149	29	32	72	2	13	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	a0003	231	1	0	1	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	a0004	231	1	0	0	1	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDC1_chr6_3717619_3756713	0/0	a0005	231	1	0	1	0	0	0	copy fasta	PXDC1	chr6	3717619	3756713
PXDNL_chr8_51314577_51814445	0/0	a0001	1463	31	7	8	12	1	3	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0002	1463	18	11	1	5	0	1	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0003	1463	13	3	3	7	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0004	1463	7	6	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/1	a0005	1463	6	2	0	3	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0006	1463	4	4	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0007	1463	4	2	1	0	1	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0008	1463	3	3	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0009	1463	3	3	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0010	1463	2	0	0	1	0	1	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0011	1463	2	2	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0012	1463	2	1	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	1/0	a0013	1463	2	0	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0014	1463	2	2	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445