JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PXDNL_chr8_51314577_51814445	0/0	a0015	1463	2	2	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0016	1463	2	0	0	0	0	2	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0017	1463	2	2	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0018	1463	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0019	1463	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0020	234	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0021	1463	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0022	1463	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0023	1463	1	0	0	1	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0024	1463	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0025	1463	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0026	1463	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0027	1257	1	0	0	0	0	1	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0028	1463	1	0	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0029	1463	1	0	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0030	1463	1	0	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0031	1463	1	0	0	1	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0032	1463	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0033	1463	1	0	1	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDNL_chr8_51314577_51814445	0/0	a0034	1463	1	1	0	0	0	0	copy fasta	PXDNL	chr8	51314577	51814445
PXDN_chr2_1626887_1749515	1/1	a0001	1479	301	85	52	116	12	34	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	a0002	1479	5	5	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	a0003	1479	3	3	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	a0004	1479	2	0	0	2	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	a0005	1479	2	0	0	0	0	2	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	a0006	1479	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	a0007	1479	1	1	0	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	a0008	1479	1	0	1	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	a0009	1479	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	a0010	1479	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	a0011	1479	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	a0012	869	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	a0013	1479	1	0	0	1	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXDN_chr2_1626887_1749515	0/0	a0014	1479	1	0	1	0	0	0	copy fasta	PXDN	chr2	1626887	1749515
PXK_chr3_58327892_58431127	1/0	a0001	578	247	68	50	96	9	23	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/1	a0002	578	43	16	16	0	1	9	copy fasta	PXK	chr3	58327892	58431127
PXK_chr3_58327892_58431127	0/0	a0003	578	10	10	0	0	0	0	copy fasta	PXK	chr3	58327892	58431127
PXMP2_chr12_132682587_132709985	1/1	a0001	195	347	91	80	117	16	41	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	a0002	195	1	0	0	0	0	1	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	a0003	195	1	0	0	1	0	0	copy fasta	PXMP2	chr12	132682587	132709985
PXMP2_chr12_132682587_132709985	0/0	a0004	200	1	1	0	0	0	0	copy fasta	PXMP2	chr12	132682587	132709985
PXMP4_chr20_33697758_33725310	0/0	a0001	212	249	65	36	111	11	26	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	1/1	a0002	212	130	27	35	40	6	20	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	a0003	212	4	0	0	4	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	a0004	212	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	a0005	212	1	0	0	0	1	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	a0006	212	1	0	0	1	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	a0007	212	1	1	0	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXMP4_chr20_33697758_33725310	0/0	a0008	212	1	0	1	0	0	0	copy fasta	PXMP4	chr20	33697758	33725310
PXN_chr12_120205447_120270730	0/1	a0001	1081	253	61	33	125	4	29	copy fasta	PXN	chr12	120205447	120270730