JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PXN_chr12_120205447_120270730	0/0	a0002	1081	38	25	11	0	1	1	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	1/0	a0003	1081	18	1	7	3	4	2	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	a0004	1081	4	0	0	4	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	a0005	1081	3	3	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	a0006	1081	2	0	0	1	0	1	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	a0007	1081	1	0	0	1	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	a0008	1081	1	0	1	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	a0009	1081	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	a0010	1081	1	1	0	0	0	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	a0011	1081	1	0	0	0	1	0	copy fasta	PXN	chr12	120205447	120270730
PXN_chr12_120205447_120270730	0/0	a0012	1081	1	0	0	0	0	1	copy fasta	PXN	chr12	120205447	120270730
PXT1_chr6_36385551_36447854	0/0	a0001	134	223	66	41	92	6	18	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	1/1	a0002	134	166	24	30	82	6	22	copy fasta	PXT1	chr6	36385551	36447854
PXT1_chr6_36385551_36447854	0/0	a0003	134	1	0	1	0	0	0	copy fasta	PXT1	chr6	36385551	36447854
PXYLP1_chr3_141226825_141299924	1/1	a0001	480	376	91	72	163	16	32	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	a0002	480	2	0	2	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	a0003	480	2	2	0	0	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	a0004	480	2	1	0	1	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	a0005	480	1	0	0	1	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PXYLP1_chr3_141226825_141299924	0/0	a0006	480	1	0	0	1	0	0	copy fasta	PXYLP1	chr3	141226825	141299924
PYCARD_chr16_31196486_31207760	1/1	a0001	195	350	90	73	137	16	32	copy fasta	PYCARD	chr16	31196486	31207760
PYCARD_chr16_31196486_31207760	0/0	a0002	90	1	0	0	1	0	0	copy fasta	PYCARD	chr16	31196486	31207760
PYCARD_chr16_31196486_31207760	0/0	a0003	195	1	0	1	0	0	0	copy fasta	PYCARD	chr16	31196486	31207760
PYCARD_chr16_31196486_31207760	0/0	a0004	195	1	0	0	1	0	0	copy fasta	PYCARD	chr16	31196486	31207760
PYCARD_chr16_31196486_31207760	0/0	a0005	5	1	0	0	1	0	0	copy fasta	PYCARD	chr16	31196486	31207760
PYCR1_chr17_81927391_81942300	1/1	a0001	319	371	94	76	145	14	40	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	a0002	319	3	0	0	3	0	0	copy fasta	PYCR1	chr17	81927391	81942300
PYCR1_chr17_81927391_81942300	0/0	a0003	319	2	2	0	0	0	0	copy fasta	PYCR1	chr17	81927391	81942300
PYCR2_chr1_225914878_225929250	1/1	a0001	320	443	94	80	205	18	44	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	a0002	320	4	0	0	4	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR2_chr1_225914878_225929250	0/0	a0003	320	1	0	0	1	0	0	copy fasta	PYCR2	chr1	225914878	225929250
PYCR3_chr8_143598210_143614575	0/0	a0001	274	165	64	25	60	0	16	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	a0002	274	137	5	31	71	11	19	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/1	a0003	274	121	15	20	73	1	11	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	a0004	274	15	10	2	0	2	1	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	a0005	274	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	a0006	274	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	a0007	274	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	a0008	274	1	1	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	a0009	274	1	1	0	0	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	a0010	274	1	0	0	0	0	1	copy fasta	PYCR3	chr8	143598210	143614575
PYCR3_chr8_143598210_143614575	0/0	a0011	274	1	0	0	1	0	0	copy fasta	PYCR3	chr8	143598210	143614575
PYDC1_chr16_31210962_31222135	0/0	a0000	0	1	0	0	1	0	0	copy fasta	PYDC1	chr16	31210962	31222135
PYDC1_chr16_31210962_31222135	1/1	a0001	89	345	92	64	139	16	32	copy fasta	PYDC1	chr16	31210962	31222135
PYDC2_chr3_191456163_191466456	0/1	a0001	97	235	67	42	85	11	29	copy fasta	PYDC2	chr3	191456163	191466456
PYDC2_chr3_191456163_191466456	1/0	a0002	97	199	27	36	117	3	15	copy fasta	PYDC2	chr3	191456163	191466456
PYDC5_chr1_158994971_159007751	1/1	a0001	113	389	91	80	171	12	33	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	a0002	113	65	4	0	51	0	10	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	a0003	113	5	5	0	0	0	0	copy fasta	PYDC5	chr1	158994971	159007751
PYDC5_chr1_158994971_159007751	0/0	a0004	113	1	0	0	0	0	1	copy fasta	PYDC5	chr1	158994971	159007751