JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PYGB_chr20_25243085_25303012	1/1	a0001	843	296	91	68	81	12	42	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	a0002	843	57	1	5	47	2	2	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	a0003	843	7	0	1	6	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	a0004	843	2	2	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	a0005	843	2	0	0	2	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	a0006	843	1	0	1	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	a0007	843	1	0	0	1	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	a0008	843	1	0	0	0	0	1	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	a0009	843	1	1	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	a0010	843	1	1	0	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	a0011	843	1	0	1	0	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	a0012	843	1	0	0	1	0	0	copy fasta	PYGB	chr20	25243085	25303012
PYGB_chr20_25243085_25303012	0/0	a0013	843	1	0	0	0	0	1	copy fasta	PYGB	chr20	25243085	25303012
PYGL_chr14_50900217_50949483	1/1	a0001	847	335	59	60	164	15	35	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	a0002	847	33	14	4	10	1	4	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	a0003	847	10	1	0	8	0	1	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	a0004	847	5	5	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	a0005	847	3	3	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	a0006	847	2	2	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	a0007	847	1	1	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGL_chr14_50900217_50949483	0/0	a0008	847	1	1	0	0	0	0	copy fasta	PYGL	chr14	50900217	50949483
PYGM_chr11_64741398_64764974	1/1	a0001	842	315	65	59	144	11	34	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	a0002	842	22	21	1	0	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	a0003	842	8	6	2	0	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	a0004	842	1	1	0	0	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	a0005	842	1	0	0	0	1	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	a0006	842	1	0	0	0	0	1	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	a0007	842	1	1	0	0	0	0	copy fasta	PYGM	chr11	64741398	64764974
PYGM_chr11_64741398_64764974	0/0	a0008	842	1	0	0	0	0	1	copy fasta	PYGM	chr11	64741398	64764974
PYGO1_chr15_55533884_55593345	1/1	a0001	419	399	87	63	191	13	43	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	a0002	419	9	2	3	0	1	3	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	a0003	419	2	2	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	a0004	419	1	1	0	0	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO1_chr15_55533884_55593345	0/0	a0005	419	1	0	0	1	0	0	copy fasta	PYGO1	chr15	55533884	55593345
PYGO2_chr1_154952026_154966782	1/1	a0001	406	296	90	56	112	10	26	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	a0002	406	3	0	0	3	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	a0003	406	1	1	0	0	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	a0004	406	1	1	0	0	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYGO2_chr1_154952026_154966782	0/0	a0005	406	1	0	0	1	0	0	copy fasta	PYGO2	chr1	154952026	154966782
PYHIN1_chr1_158926552_158982059	1/1	a0001	492	395	96	68	182	12	35	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	a0002	492	1	0	0	0	0	1	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	a0003	492	1	0	1	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYHIN1_chr1_158926552_158982059	0/0	a0004	492	1	0	1	0	0	0	copy fasta	PYHIN1	chr1	158926552	158982059
PYM1_chr12_55896413_55932894	1/1	a0001	204	339	78	74	135	16	34	copy fasta	PYM1	chr12	55896413	55932894
PYM1_chr12_55896413_55932894	0/0	a0002	204	5	0	0	5	0	0	copy fasta	PYM1	chr12	55896413	55932894
PYROXD1_chr12_21432655_21476250	1/1	a0001	500	412	91	68	197	16	38	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	a0002	500	2	2	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	a0003	500	1	1	0	0	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD1_chr12_21432655_21476250	0/0	a0004	500	1	0	0	1	0	0	copy fasta	PYROXD1	chr12	21432655	21476250
PYROXD2_chr10_98378568_98420182	0/0	a0001	581	189	36	34	90	5	24	copy fasta	PYROXD2	chr10	98378568	98420182