JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PYROXD2_chr10_98378568_98420182	1/1	a0002	581	141	6	31	82	6	14	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	a0003	581	74	44	7	22	0	1	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	a0004	581	5	5	0	0	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	a0005	581	2	0	0	0	0	2	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	a0006	581	1	0	0	0	1	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	a0007	581	1	1	0	0	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	a0008	567	1	0	0	0	0	1	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	a0009	581	1	0	0	1	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	a0010	581	1	1	0	0	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	a0011	581	1	1	0	0	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYROXD2_chr10_98378568_98420182	0/0	a0012	581	1	0	0	1	0	0	copy fasta	PYROXD2	chr10	98378568	98420182
PYURF_chr4_88515998_88528776	1/1	a0001	114	444	93	80	210	14	45	copy fasta	PYURF	chr4	88515998	88528776
PYURF_chr4_88515998_88528776	0/0	a0002	39	1	0	0	0	0	1	copy fasta	PYURF	chr4	88515998	88528776
PYURF_chr4_88515998_88528776	0/0	a0003	114	1	1	0	0	0	0	copy fasta	PYURF	chr4	88515998	88528776
PYY_chr17_43947733_43958940	0/1	a0001	97	200	49	29	102	7	12	copy fasta	PYY	chr17	43947733	43958940
PYY_chr17_43947733_43958940	0/0	a0002	97	151	33	39	48	9	22	copy fasta	PYY	chr17	43947733	43958940
PYY_chr17_43947733_43958940	0/0	a0003	97	12	12	0	0	0	0	copy fasta	PYY	chr17	43947733	43958940
PYY_chr17_43947733_43958940	1/0	a0004	97	1	0	0	0	0	0	copy fasta	PYY	chr17	43947733	43958940
PZP_chr12_9143840_9213395	0/0	a0001	1482	87	21	17	42	3	4	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0002	1482	43	6	10	24	2	1	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0003	1482	27	13	4	8	0	2	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0004	1482	17	2	10	0	2	3	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0005	597	17	0	0	15	0	2	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0006	1482	16	2	1	9	0	4	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/1	a0007	1482	16	3	0	8	2	2	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0008	1482	15	6	3	3	0	3	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0009	1482	14	0	1	6	3	4	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0010	1482	11	3	7	0	0	1	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0011	1482	8	8	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	1/0	a0012	1482	7	6	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0013	1482	6	0	2	1	0	3	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0014	1482	5	0	0	2	0	3	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0015	1482	5	5	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0016	1482	5	1	2	1	1	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0017	1482	5	0	2	1	0	2	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0018	1482	4	2	1	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0019	1482	4	0	0	4	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0020	1167	2	2	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0021	1482	2	2	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0022	1482	2	0	2	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0023	1482	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0024	1482	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0025	1482	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0026	1482	1	0	1	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0027	1482	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0028	1482	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0029	1482	1	0	0	0	1	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0030	1167	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0031	1482	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0032	1482	1	0	1	0	0	0	copy fasta	PZP	chr12	9143840	9213395