JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PZP_chr12_9143840_9213395	0/0	a0033	1482	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0034	1482	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0035	1482	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0036	1482	1	1	0	0	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0037	1482	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
PZP_chr12_9143840_9213395	0/0	a0038	1482	1	0	0	1	0	0	copy fasta	PZP	chr12	9143840	9213395
QARS1_chr3_49090932_49109757	1/1	a0001	775	277	84	55	81	15	40	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	a0002	775	2	0	2	0	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	a0003	775	1	0	1	0	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	a0004	775	1	1	0	0	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	a0005	775	1	0	0	0	1	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	a0006	775	1	0	0	1	0	0	copy fasta	QARS1	chr3	49090932	49109757
QARS1_chr3_49090932_49109757	0/0	a0007	775	1	1	0	0	0	0	copy fasta	QARS1	chr3	49090932	49109757
QDPR_chr4_17481395_17517090	1/1	a0001	244	406	96	72	168	18	50	copy fasta	QDPR	chr4	17481395	17517090
QKI_chr6_163409718_163583592	1/1	a0001	341	301	96	52	109	8	34	copy fasta	QKI	chr6	163409718	163583592
QKI_chr6_163409718_163583592	0/0	a0002	341	1	0	0	1	0	0	copy fasta	QKI	chr6	163409718	163583592
QNG1_chr9_83933311_83961742	1/1	a0001	341	383	85	56	182	16	42	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	a0002	341	5	5	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	a0003	341	3	3	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QNG1_chr9_83933311_83961742	0/0	a0004	341	3	3	0	0	0	0	copy fasta	QNG1	chr9	83933311	83961742
QPCTL_chr19_45687666_45708987	1/1	a0001	382	432	84	83	204	13	46	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	a0002	382	5	4	1	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	a0003	382	2	2	0	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	a0004	382	2	2	0	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	a0005	382	2	2	0	0	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	a0006	382	1	0	0	1	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	a0007	382	1	0	0	0	1	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCTL_chr19_45687666_45708987	0/0	a0008	382	1	0	0	1	0	0	copy fasta	QPCTL	chr19	45687666	45708987
QPCT_chr2_37339630_37378322	1/1	a0001	361	318	89	64	111	12	40	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	a0002	361	71	0	9	62	0	0	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	a0003	361	32	0	4	25	2	1	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	a0004	361	19	5	3	10	0	1	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	a0005	361	1	0	0	1	0	0	copy fasta	QPCT	chr2	37339630	37378322
QPCT_chr2_37339630_37378322	0/0	a0006	361	1	0	0	1	0	0	copy fasta	QPCT	chr2	37339630	37378322
QPRT_chr16_29674180_29703699	0/0	a0001	297	285	81	55	101	11	37	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/1	a0002	297	31	1	13	8	3	5	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/0	a0003	297	1	0	0	1	0	0	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/0	a0004	297	1	1	0	0	0	0	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	0/0	a0005	297	1	1	0	0	0	0	copy fasta	QPRT	chr16	29674180	29703699
QPRT_chr16_29674180_29703699	1/0	a0006	297	1	0	0	0	0	0	copy fasta	QPRT	chr16	29674180	29703699
QRFPR_chr4_121323642_121386018	1/0	a0001	431	196	70	38	53	14	20	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	a0002	431	125	12	29	67	0	17	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	a0003	431	22	2	1	18	0	1	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/1	a0004	431	17	1	6	6	0	3	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	a0005	431	12	0	5	7	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	a0006	431	5	5	0	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	a0007	431	2	2	0	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	a0008	431	1	1	0	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	a0009	431	1	0	0	1	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	a0010	431	1	1	0	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018