JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
QRFPR_chr4_121323642_121386018	0/0	a0011	431	1	0	1	0	0	0	copy fasta	QRFPR	chr4	121323642	121386018
QRFPR_chr4_121323642_121386018	0/0	a0012	431	1	0	0	0	0	1	copy fasta	QRFPR	chr4	121323642	121386018
QRFP_chr9_130887707_130901812	1/1	a0001	136	410	87	75	192	11	43	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	a0002	136	7	3	4	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	a0003	136	5	5	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	a0004	136	3	3	0	0	0	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	a0005	136	2	0	1	0	1	0	copy fasta	QRFP	chr9	130887707	130901812
QRFP_chr9_130887707_130901812	0/0	a0006	136	1	0	0	0	0	1	copy fasta	QRFP	chr9	130887707	130901812
QRICH1_chr3_49024707_49099071	1/1	a0001	776	206	78	40	51	11	24	copy fasta	QRICH1	chr3	49024707	49099071
QRICH1_chr3_49024707_49099071	0/0	a0002	776	20	0	6	9	3	2	copy fasta	QRICH1	chr3	49024707	49099071
QRICH2_chr17_76269049_76313276	1/1	a0001	1887	122	13	26	54	4	23	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0002	1876	101	12	14	66	2	7	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0003	1887	33	14	13	1	0	5	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0004	1876	17	8	3	6	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0005	1856	11	11	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0006	1876	11	1	0	10	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0007	1876	7	5	2	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0008	1876	5	5	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0009	1887	4	0	0	4	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0010	1876	3	3	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0011	1887	2	0	2	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0012	1887	2	0	0	2	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0013	1937	2	0	0	2	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0014	1876	2	2	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0015	1856	2	2	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0016	1856	2	2	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0017	1876	2	2	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0018	1876	2	1	1	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0019	1866	2	0	2	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0020	1876	2	2	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0021	1876	2	0	1	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0022	1887	1	0	1	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0023	1907	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0024	1887	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0025	1877	1	0	1	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0026	1887	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0027	1887	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0028	1887	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0029	1887	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0030	1887	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0031	1856	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0032	1876	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0033	1876	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0034	1887	1	0	0	0	1	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0035	1887	1	0	0	0	1	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0036	1876	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0037	1887	1	1	0	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0038	1887	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0039	1887	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0040	1876	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276