JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
QRICH2_chr17_76269049_76313276	0/0	a0041	1876	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0042	1876	1	0	0	1	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0043	1876	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0044	1876	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0045	1876	1	0	1	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0046	1876	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0047	1876	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0048	1866	1	0	0	0	0	1	copy fasta	QRICH2	chr17	76269049	76313276
QRICH2_chr17_76269049_76313276	0/0	a0049	1896	1	0	1	0	0	0	copy fasta	QRICH2	chr17	76269049	76313276
QRSL1_chr6_106624578_106673417	1/1	a0001	528	358	68	66	178	13	31	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	a0002	528	43	20	6	15	1	1	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	a0003	528	16	0	0	14	0	2	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	a0004	528	2	0	2	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	a0005	283	1	1	0	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	a0006	290	1	0	0	1	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QRSL1_chr6_106624578_106673417	0/0	a0007	528	1	1	0	0	0	0	copy fasta	QRSL1	chr6	106624578	106673417
QSER1_chr11_32887811_32985270	0/0	a0001	1864	193	69	42	51	9	22	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/1	a0002	1864	13	3	2	2	0	5	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	1/0	a0003	1864	10	9	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	a0004	1864	6	0	3	0	1	2	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	a0005	1870	4	4	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	a0006	1864	2	0	0	2	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	a0007	1864	1	0	0	0	0	1	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	a0008	1864	1	0	1	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	a0009	1864	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	a0010	1864	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	a0011	1864	1	0	0	1	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	a0012	1864	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	a0013	1865	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSER1_chr11_32887811_32985270	0/0	a0014	1865	1	1	0	0	0	0	copy fasta	QSER1	chr11	32887811	32985270
QSOX1_chr1_180149869_180209030	1/1	a0001	747	275	66	46	112	14	35	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	a0002	747	47	0	1	44	1	1	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	a0003	747	28	6	5	15	0	2	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	a0004	747	16	5	6	0	3	2	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	a0005	747	8	7	1	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	a0006	747	5	0	4	0	0	1	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	a0007	693	2	1	1	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	a0008	747	2	2	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	a0009	747	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	a0010	747	1	0	0	1	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	a0011	747	1	0	0	0	0	1	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	a0012	747	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX1_chr1_180149869_180209030	0/0	a0013	747	1	1	0	0	0	0	copy fasta	QSOX1	chr1	180149869	180209030
QSOX2_chr9_136201333_136250812	1/1	a0001	698	326	89	64	122	11	38	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	a0002	698	58	2	3	44	3	6	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	a0003	698	2	0	0	0	2	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	a0004	698	2	2	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	a0005	698	1	0	1	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	a0006	698	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QSOX2_chr9_136201333_136250812	0/0	a0007	698	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812