JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATAD3C_chr1_1444689_1475163	0/0	a0017	411	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0018	411	1	0	0	0	0	1	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0019	411	1	0	0	0	1	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0020	411	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0021	411	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0022	411	1	0	0	1	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0023	411	1	1	0	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0024	411	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD3C_chr1_1444689_1475163	0/0	a0025	58	1	0	1	0	0	0	copy fasta	ATAD3C	chr1	1444689	1475163
ATAD5_chr17_30826966_30900869	1/0	a0001	1844	131	22	29	57	6	16	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	a0002	1842	64	7	11	36	0	10	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	a0003	1844	30	22	8	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/1	a0004	1844	30	6	14	0	6	3	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	a0005	1844	13	13	0	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	a0006	1844	11	10	1	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	a0007	1844	3	3	0	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	a0008	1844	1	0	1	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	a0009	1844	1	1	0	0	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	a0010	1851	1	0	0	1	0	0	copy fasta	ATAD5	chr17	30826966	30900869
ATAD5_chr17_30826966_30900869	0/0	a0011	1844	1	0	0	0	0	1	copy fasta	ATAD5	chr17	30826966	30900869
ATAT1_chr6_30621874_30651821	0/1	a0001	421	380	83	65	171	16	44	copy fasta	ATAT1	chr6	30621874	30651821
ATAT1_chr6_30621874_30651821	0/0	a0002	310	16	1	8	6	0	1	copy fasta	ATAT1	chr6	30621874	30651821
ATAT1_chr6_30621874_30651821	0/0	a0003	421	5	3	1	0	0	1	copy fasta	ATAT1	chr6	30621874	30651821
ATAT1_chr6_30621874_30651821	0/0	a0004	421	1	1	0	0	0	0	copy fasta	ATAT1	chr6	30621874	30651821
ATAT1_chr6_30621874_30651821	0/0	a0005	180	1	1	0	0	0	0	copy fasta	ATAT1	chr6	30621874	30651821
ATAT1_chr6_30621874_30651821	0/0	a0006	421	1	0	0	1	0	0	copy fasta	ATAT1	chr6	30621874	30651821
ATAT1_chr6_30621874_30651821	0/0	a0007	421	1	1	0	0	0	0	copy fasta	ATAT1	chr6	30621874	30651821
ATCAY_chr19_3875685_3933082	1/1	a0001	371	383	96	80	146	18	41	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	a0002	371	1	0	0	0	0	1	copy fasta	ATCAY	chr19	3875685	3933082
ATE1_chr10_121735424_121933031	1/1	a0001	518	320	82	58	136	8	34	copy fasta	ATE1	chr10	121735424	121933031
ATF1_chr12_50759101_50826162	1/1	a0001	271	381	89	66	176	10	38	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	a0002	271	1	1	0	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF2_chr2_175067259_175173203	1/1	a0001	505	223	67	28	84	14	28	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	a0002	505	1	1	0	0	0	0	copy fasta	ATF2	chr2	175067259	175173203
ATF3_chr1_212603761_212625775	1/1	a0001	181	448	90	78	218	16	44	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	a0002	181	1	1	0	0	0	0	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	a0003	181	1	1	0	0	0	0	copy fasta	ATF3	chr1	212603761	212625775
ATF4_chr22_39515562_39527683	1/0	a0001	351	230	52	48	93	10	26	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/1	a0002	351	89	17	14	32	7	18	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	a0003	351	10	9	1	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	a0004	351	6	6	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	a0005	351	4	0	0	4	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	a0006	351	3	3	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	a0007	351	3	2	1	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	a0008	351	2	2	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	a0009	351	1	1	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	a0010	351	1	0	0	0	1	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	a0011	351	1	1	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	a0012	351	1	0	0	1	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	a0013	351	1	0	1	0	0	0	copy fasta	ATF4	chr22	39515562	39527683