JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
QSOX2_chr9_136201333_136250812	0/0	a0008	698	1	1	0	0	0	0	copy fasta	QSOX2	chr9	136201333	136250812
QTRT1_chr19_10696439_10718365	1/1	a0001	403	401	83	72	186	16	42	copy fasta	QTRT1	chr19	10696439	10718365
QTRT1_chr19_10696439_10718365	0/0	a0002	403	1	0	0	1	0	0	copy fasta	QTRT1	chr19	10696439	10718365
QTRT1_chr19_10696439_10718365	0/0	a0003	403	1	0	0	1	0	0	copy fasta	QTRT1	chr19	10696439	10718365
QTRT1_chr19_10696439_10718365	0/0	a0004	403	1	1	0	0	0	0	copy fasta	QTRT1	chr19	10696439	10718365
QTRT2_chr3_114051737_114093422	1/1	a0001	415	415	83	79	190	16	45	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	a0002	415	11	10	1	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	a0003	415	1	0	0	1	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	a0004	415	1	1	0	0	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	a0005	415	1	0	0	1	0	0	copy fasta	QTRT2	chr3	114051737	114093422
QTRT2_chr3_114051737_114093422	0/0	a0006	415	1	0	0	0	0	1	copy fasta	QTRT2	chr3	114051737	114093422
R3HCC1L_chr10_98129657_98249897	0/1	a0001	778	210	49	27	107	6	20	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0002	778	98	8	20	51	4	15	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0003	778	42	13	10	7	7	5	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0004	778	7	7	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0005	778	3	2	1	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	1/0	a0006	778	3	2	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0007	778	3	0	0	3	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0008	778	2	2	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0009	778	2	0	1	0	1	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0010	778	2	0	2	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0011	778	2	2	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0012	778	2	1	1	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0013	778	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0014	778	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0015	778	1	0	0	0	0	1	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0016	778	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0017	778	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0018	778	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0019	778	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0020	778	1	0	1	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0021	778	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0022	778	1	0	1	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0023	778	1	1	0	0	0	0	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1L_chr10_98129657_98249897	0/0	a0024	778	1	0	0	0	0	1	copy fasta	R3HCC1L	chr10	98129657	98249897
R3HCC1_chr8_23283108_23301279	1/1	a0001	44	427	94	62	209	15	45	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	a0002	44	40	2	20	10	3	5	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	a0003	44	4	4	0	0	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HCC1_chr8_23283108_23301279	0/0	a0004	54	1	0	0	1	0	0	copy fasta	R3HCC1	chr8	23283108	23301279
R3HDM1_chr2_135526484_135730269	0/1	a0001	1134	99	53	9	29	0	7	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	a0002	1134	53	10	7	27	0	9	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	a0003	1134	48	6	11	24	0	7	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	1/0	a0004	1134	13	1	9	0	0	2	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	a0005	1076	4	0	1	2	0	1	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	a0006	1076	4	3	0	1	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	a0007	1134	3	0	0	3	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	a0008	1076	3	0	1	2	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	a0009	1134	2	2	0	0	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	a0010	1134	1	1	0	0	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM1_chr2_135526484_135730269	0/0	a0011	1134	1	1	0	0	0	0	copy fasta	R3HDM1	chr2	135526484	135730269