JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
R3HDM1_chr2_135526484_135730269	0/0	a0012	1076	1	1	0	0	0	0	copy fasta	R3HDM1	chr2	135526484	135730269
R3HDM2_chr12_57248764_57436043	1/1	a0001	990	305	72	43	140	10	38	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	a0002	990	16	13	3	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	a0003	665	8	2	2	4	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	a0004	990	3	0	2	0	0	1	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	a0005	990	1	1	0	0	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	a0006	990	1	0	0	1	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	a0007	990	1	0	0	0	0	1	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM2_chr12_57248764_57436043	0/0	a0008	990	1	0	0	1	0	0	copy fasta	R3HDM2	chr12	57248764	57436043
R3HDM4_chr19_891503_918219	1/1	a0001	268	370	90	85	137	18	38	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	a0002	268	51	1	0	40	0	10	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	a0003	268	4	3	1	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	a0004	268	4	4	0	0	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	a0005	268	1	0	0	1	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	a0006	268	1	0	0	1	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDM4_chr19_891503_918219	0/0	a0007	268	1	0	0	1	0	0	copy fasta	R3HDM4	chr19	891503	918219
R3HDML_chr20_44332043_44356238	1/1	a0001	253	410	86	56	209	13	44	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	a0002	253	20	8	8	0	3	1	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	a0003	253	1	0	1	0	0	0	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	a0004	257	1	0	0	0	0	1	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	a0005	253	1	0	1	0	0	0	copy fasta	R3HDML	chr20	44332043	44356238
R3HDML_chr20_44332043_44356238	0/0	a0006	253	1	0	0	1	0	0	copy fasta	R3HDML	chr20	44332043	44356238
RAB10_chr2_26029084_26142454	1/1	a0001	200	211	67	48	58	8	28	copy fasta	RAB10	chr2	26029084	26142454
RAB10_chr2_26029084_26142454	0/0	a0002	200	1	1	0	0	0	0	copy fasta	RAB10	chr2	26029084	26142454
RAB11A_chr15_65864491_65896989	1/1	a0001	216	354	84	60	156	14	38	copy fasta	RAB11A	chr15	65864491	65896989
RAB11B_chr19_8385360_8409434	1/1	a0001	218	425	100	80	177	18	48	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	a0002	218	2	0	0	2	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11B_chr19_8385360_8409434	0/0	a0003	173	1	0	0	1	0	0	copy fasta	RAB11B	chr19	8385360	8409434
RAB11FIP1_chr8_37853618_37904497	0/1	a0001	1283	81	13	17	36	2	12	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0002	1283	41	13	9	11	4	4	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0003	1283	27	2	7	12	2	4	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	1/0	a0004	1283	26	6	7	0	2	10	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0005	1283	11	0	5	2	0	4	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0006	1283	9	9	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0007	1283	7	7	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0008	1283	6	0	0	6	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0009	1283	6	1	2	0	3	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0010	1283	5	0	0	5	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0011	1283	5	1	4	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0012	1283	3	3	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0013	1283	3	3	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0014	1283	3	0	0	3	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0015	1283	3	3	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0016	1283	2	2	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0017	1283	2	2	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0018	1283	2	2	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0019	1283	1	0	0	0	0	1	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0020	1283	1	0	0	0	1	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0021	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0022	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497