JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAB11FIP1_chr8_37853618_37904497	0/0	a0023	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0024	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0025	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0026	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0027	1283	1	0	0	0	0	1	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0028	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0029	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0030	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0031	1283	1	0	0	1	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0032	1283	1	0	0	1	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0033	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0034	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0035	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0036	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0037	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0038	1283	1	1	0	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0039	1283	1	0	1	0	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP1_chr8_37853618_37904497	0/0	a0040	1283	1	0	0	1	0	0	copy fasta	RAB11FIP1	chr8	37853618	37904497
RAB11FIP2_chr10_117999916_118051941	1/1	a0001	512	354	85	65	161	14	27	copy fasta	RAB11FIP2	chr10	117999916	118051941
RAB11FIP2_chr10_117999916_118051941	0/0	a0002	512	42	2	5	35	0	0	copy fasta	RAB11FIP2	chr10	117999916	118051941
RAB11FIP2_chr10_117999916_118051941	0/0	a0003	512	1	0	0	0	0	1	copy fasta	RAB11FIP2	chr10	117999916	118051941
RAB11FIP2_chr10_117999916_118051941	0/0	a0004	512	1	1	0	0	0	0	copy fasta	RAB11FIP2	chr10	117999916	118051941
RAB11FIP2_chr10_117999916_118051941	0/0	a0005	512	1	0	0	1	0	0	copy fasta	RAB11FIP2	chr10	117999916	118051941
RAB11FIP2_chr10_117999916_118051941	0/0	a0006	512	1	0	0	1	0	0	copy fasta	RAB11FIP2	chr10	117999916	118051941
RAB11FIP3_chr16_420649_528011	0/1	a0001	756	274	75	50	113	11	24	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	a0002	756	11	3	0	8	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	a0003	756	3	3	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	a0004	756	2	2	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	a0005	756	1	1	0	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	a0006	756	1	0	0	0	1	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	a0007	756	1	0	1	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	a0008	756	1	0	1	0	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP3_chr16_420649_528011	0/0	a0009	756	1	0	0	1	0	0	copy fasta	RAB11FIP3	chr16	420649	528011
RAB11FIP4_chr17_31386675_31543211	1/1	a0001	637	300	77	70	104	12	35	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	a0002	637	5	5	0	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	a0003	637	3	0	0	0	0	3	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	a0004	637	1	1	0	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP4_chr17_31386675_31543211	0/0	a0005	637	1	1	0	0	0	0	copy fasta	RAB11FIP4	chr17	31386675	31543211
RAB11FIP5_chr2_73068382_73117948	0/0	a0001	1322	178	44	17	101	4	12	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	1/1	a0002	1324	160	28	47	53	10	20	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0003	1325	7	6	1	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0004	1324	5	0	0	5	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0005	1323	5	5	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0006	1324	2	2	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0007	1323	2	2	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0008	1323	2	2	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0009	1322	2	2	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0010	1324	2	0	0	2	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0011	1322	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0012	1322	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948