JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAB23_chr6_57181992_57227307	1/1	a0001	237	196	65	37	65	9	18	copy fasta	RAB23	chr6	57181992	57227307
RAB23_chr6_57181992_57227307	0/0	a0002	237	50	19	9	17	1	4	copy fasta	RAB23	chr6	57181992	57227307
RAB24_chr5_177296198_177308719	1/1	a0001	203	401	100	68	171	16	44	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	a0002	52	1	0	0	1	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	a0003	186	1	0	0	1	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB24_chr5_177296198_177308719	0/0	a0004	203	1	0	0	1	0	0	copy fasta	RAB24	chr5	177296198	177308719
RAB25_chr1_156056160_156075504	1/1	a0001	213	344	86	61	138	12	45	copy fasta	RAB25	chr1	156056160	156075504
RAB25_chr1_156056160_156075504	0/0	a0002	213	1	0	0	1	0	0	copy fasta	RAB25	chr1	156056160	156075504
RAB25_chr1_156056160_156075504	0/0	a0003	213	1	0	1	0	0	0	copy fasta	RAB25	chr1	156056160	156075504
RAB25_chr1_156056160_156075504	0/0	a0004	213	1	0	0	1	0	0	copy fasta	RAB25	chr1	156056160	156075504
RAB25_chr1_156056160_156075504	0/0	a0005	213	1	1	0	0	0	0	copy fasta	RAB25	chr1	156056160	156075504
RAB25_chr1_156056160_156075504	0/0	a0006	213	1	1	0	0	0	0	copy fasta	RAB25	chr1	156056160	156075504
RAB25_chr1_156056160_156075504	0/0	a0007	213	1	0	0	0	0	1	copy fasta	RAB25	chr1	156056160	156075504
RAB26_chr16_2143625_2159165	1/1	a0001	256	379	98	69	151	16	43	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	a0002	256	3	0	3	0	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	a0003	256	1	0	0	1	0	0	copy fasta	RAB26	chr16	2143625	2159165
RAB26_chr16_2143625_2159165	0/0	a0004	256	1	0	0	0	0	1	copy fasta	RAB26	chr16	2143625	2159165
RAB27A_chr15_55197966_55294813	1/1	a0001	221	317	89	62	112	16	36	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	a0002	221	1	0	1	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	a0003	221	1	0	1	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27A_chr15_55197966_55294813	0/0	a0004	221	1	1	0	0	0	0	copy fasta	RAB27A	chr15	55197966	55294813
RAB27B_chr18_54823477_54900516	1/1	a0001	218	331	81	74	126	8	40	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	a0002	218	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	a0003	218	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB27B_chr18_54823477_54900516	0/0	a0004	218	1	1	0	0	0	0	copy fasta	RAB27B	chr18	54823477	54900516
RAB28_chr4_13362724_13489340	1/1	a0001	220	195	46	36	68	12	31	copy fasta	RAB28	chr4	13362724	13489340
RAB28_chr4_13362724_13489340	0/0	a0002	220	1	0	0	0	0	1	copy fasta	RAB28	chr4	13362724	13489340
RAB29_chr1_205762986_205780482	1/1	a0001	203	411	100	79	171	16	43	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	a0002	203	2	0	1	0	0	1	copy fasta	RAB29	chr1	205762986	205780482
RAB29_chr1_205762986_205780482	0/0	a0003	203	1	0	0	1	0	0	copy fasta	RAB29	chr1	205762986	205780482
RAB2A_chr8_60511987_60628644	1/1	a0001	212	358	90	54	166	10	36	copy fasta	RAB2A	chr8	60511987	60628644
RAB2B_chr14_21454020_21481959	1/1	a0001	216	409	89	70	186	16	46	copy fasta	RAB2B	chr14	21454020	21481959
RAB2B_chr14_21454020_21481959	0/0	a0002	216	3	3	0	0	0	0	copy fasta	RAB2B	chr14	21454020	21481959
RAB30_chr11_82968133_83076897	1/1	a0001	203	328	84	60	132	10	40	copy fasta	RAB30	chr11	82968133	83076897
RAB31_chr18_9703301_9867551	1/1	a0001	195	321	84	67	106	14	48	copy fasta	RAB31	chr18	9703301	9867551
RAB31_chr18_9703301_9867551	0/0	a0002	195	1	0	1	0	0	0	copy fasta	RAB31	chr18	9703301	9867551
RAB32_chr6_146538833_146559953	1/1	a0001	225	414	92	72	196	12	40	copy fasta	RAB32	chr6	146538833	146559953
RAB33A_chrX_130166962_130189870	1/1	a0001	237	311	78	50	136	13	32	copy fasta	RAB33A	chrX	130166962	130189870
RAB33A_chrX_130166962_130189870	0/0	a0002	237	3	0	3	0	0	0	copy fasta	RAB33A	chrX	130166962	130189870
RAB33A_chrX_130166962_130189870	0/0	a0003	121	1	0	0	1	0	0	copy fasta	RAB33A	chrX	130166962	130189870
RAB33A_chrX_130166962_130189870	0/0	a0004	65	1	0	0	1	0	0	copy fasta	RAB33A	chrX	130166962	130189870
RAB33B_chr4_139449121_139481609	1/1	a0001	229	402	98	62	180	18	42	copy fasta	RAB33B	chr4	139449121	139481609
RAB34_chr17_28709284_28722868	1/1	a0001	259	344	87	68	132	12	43	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	a0002	259	1	1	0	0	0	0	copy fasta	RAB34	chr17	28709284	28722868
RAB34_chr17_28709284_28722868	0/0	a0003	259	1	0	0	0	0	1	copy fasta	RAB34	chr17	28709284	28722868
RAB35_chr12_120090099_120121753	1/1	a0001	201	401	98	82	167	12	40	copy fasta	RAB35	chr12	120090099	120121753
RAB35_chr12_120090099_120121753	0/0	a0002	201	13	0	0	13	0	0	copy fasta	RAB35	chr12	120090099	120121753
RAB36_chr22_23140477_23170663	0/0	a0001	267	221	55	39	98	5	24	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	1/1	a0002	267	159	37	29	64	8	19	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	a0003	267	8	0	8	0	0	0	copy fasta	RAB36	chr22	23140477	23170663