JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAB36_chr22_23140477_23170663	0/0	a0004	267	3	3	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	a0005	267	2	2	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	a0006	267	1	0	0	0	0	1	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	a0007	267	1	0	0	0	1	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	a0008	267	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	a0009	267	1	0	0	1	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB36_chr22_23140477_23170663	0/0	a0010	267	1	1	0	0	0	0	copy fasta	RAB36	chr22	23140477	23170663
RAB37_chr17_74732256_74752335	1/1	a0001	223	427	93	80	192	16	44	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	a0002	223	3	1	2	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	a0003	223	1	1	0	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB37_chr17_74732256_74752335	0/0	a0004	223	1	1	0	0	0	0	copy fasta	RAB37	chr17	74732256	74752335
RAB38_chr11_88108251_88180443	1/1	a0001	211	417	96	80	182	14	43	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	a0002	211	2	1	0	0	0	1	copy fasta	RAB38	chr11	88108251	88180443
RAB38_chr11_88108251_88180443	0/0	a0003	211	1	1	0	0	0	0	copy fasta	RAB38	chr11	88108251	88180443
RAB39A_chr11_107923448_107968482	1/1	a0001	217	403	85	68	186	18	44	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	a0002	217	1	0	0	1	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	a0003	217	1	1	0	0	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39A_chr11_107923448_107968482	0/0	a0004	217	1	0	0	1	0	0	copy fasta	RAB39A	chr11	107923448	107968482
RAB39B_chrX_155253235_155269491	1/1	a0001	213	291	72	55	123	13	26	copy fasta	RAB39B	chrX	155253235	155269491
RAB39B_chrX_155253235_155269491	0/0	a0002	82	1	0	0	1	0	0	copy fasta	RAB39B	chrX	155253235	155269491
RAB3A_chr19_18191784_18209042	1/1	a0001	220	366	91	72	140	16	45	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	a0002	220	1	1	0	0	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	a0003	220	1	0	0	0	0	1	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	a0004	220	1	0	0	1	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3A_chr19_18191784_18209042	0/0	a0005	220	1	0	0	1	0	0	copy fasta	RAB3A	chr19	18191784	18209042
RAB3B_chr1_51902956_51995700	1/1	a0001	219	62	42	8	6	0	4	copy fasta	RAB3B	chr1	51902956	51995700
RAB3C_chr5_58578075_58864394	1/1	a0001	227	220	60	46	74	8	30	copy fasta	RAB3C	chr5	58578075	58864394
RAB3D_chr19_11317068_11344657	1/1	a0001	219	394	82	72	189	16	33	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	a0002	219	17	15	2	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	a0003	219	1	0	0	1	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	a0004	219	1	0	0	0	0	1	copy fasta	RAB3D	chr19	11317068	11344657
RAB3D_chr19_11317068_11344657	0/0	a0005	219	1	1	0	0	0	0	copy fasta	RAB3D	chr19	11317068	11344657
RAB3GAP1_chr2_135047292_135175710	1/1	a0001	981	209	62	38	79	3	25	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	a0002	981	59	1	8	40	1	9	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	a0003	981	4	4	0	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	a0004	981	4	4	0	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	a0005	981	1	0	0	1	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	a0006	981	1	1	0	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	a0007	981	1	1	0	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP1_chr2_135047292_135175710	0/0	a0008	981	1	1	0	0	0	0	copy fasta	RAB3GAP1	chr2	135047292	135175710
RAB3GAP2_chr1_220143293_220277453	1/1	a0001	1393	323	81	57	148	7	28	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	a0002	1393	25	1	5	11	1	7	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	a0003	1393	19	5	2	10	0	2	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	a0004	1393	2	0	0	0	0	2	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	a0005	1393	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	a0006	1393	1	1	0	0	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	a0007	1393	1	0	0	0	0	1	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	a0008	1393	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	a0009	1393	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	a0010	1393	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453