JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAB3GAP2_chr1_220143293_220277453	0/0	a0011	84	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	a0012	1393	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3GAP2_chr1_220143293_220277453	0/0	a0013	1393	1	0	0	1	0	0	copy fasta	RAB3GAP2	chr1	220143293	220277453
RAB3IL1_chr11_61892301_61922566	1/1	a0001	382	271	81	65	89	9	25	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	a0002	382	84	0	4	70	2	8	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	a0003	382	24	13	6	0	3	2	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	a0004	382	8	2	1	0	2	3	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	a0005	382	1	1	0	0	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	a0006	382	1	0	0	1	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	a0007	382	1	0	0	1	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	a0008	382	1	1	0	0	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IL1_chr11_61892301_61922566	0/0	a0009	382	1	0	0	1	0	0	copy fasta	RAB3IL1	chr11	61892301	61922566
RAB3IP_chr12_69733860_69828199	1/1	a0001	460	392	87	72	181	14	36	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	a0002	460	4	0	0	4	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	a0003	460	3	2	1	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	a0004	460	1	1	0	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	a0005	460	1	0	1	0	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB3IP_chr12_69733860_69828199	0/0	a0006	460	1	0	0	1	0	0	copy fasta	RAB3IP	chr12	69733860	69828199
RAB40AL_chrX_102932272_102943300	1/1	a0001	278	231	36	38	124	10	21	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	a0002	278	76	36	4	26	0	10	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	a0003	278	2	1	1	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	a0004	109	1	0	0	1	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	a0005	278	1	1	0	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	a0006	278	1	0	1	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	a0007	278	1	0	1	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	a0008	278	1	1	0	0	0	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	a0009	278	1	0	0	0	1	0	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40AL_chrX_102932272_102943300	0/0	a0010	278	1	0	0	0	0	1	copy fasta	RAB40AL	chrX	102932272	102943300
RAB40A_chrX_103494130_103524489	1/1	a0001	277	217	50	33	103	5	24	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	a0002	277	23	4	11	0	6	2	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	a0003	277	17	17	0	0	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	a0004	277	5	4	1	0	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	a0005	277	2	0	0	2	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	a0006	236	1	0	0	1	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40A_chrX_103494130_103524489	0/0	a0007	278	1	1	0	0	0	0	copy fasta	RAB40A	chrX	103494130	103524489
RAB40B_chr17_82649973_82703698	1/1	a0001	278	335	74	72	125	18	44	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	a0002	278	2	0	0	0	0	2	copy fasta	RAB40B	chr17	82649973	82703698
RAB40B_chr17_82649973_82703698	0/0	a0003	278	1	0	0	1	0	0	copy fasta	RAB40B	chr17	82649973	82703698
RAB40C_chr16_585066_634268	1/1	a0001	281	349	94	70	125	12	46	copy fasta	RAB40C	chr16	585066	634268
RAB40C_chr16_585066_634268	0/0	a0002	281	1	0	0	1	0	0	copy fasta	RAB40C	chr16	585066	634268
RAB41_chrX_70277172_70290002	0/0	a0000	0	1	1	0	0	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	1/1	a0001	222	306	75	48	134	13	34	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	a0002	222	3	0	0	3	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	a0003	100	1	0	0	1	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	a0004	222	1	0	1	0	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	a0005	206	1	0	0	1	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB41_chrX_70277172_70290002	0/0	a0006	222	1	0	0	1	0	0	copy fasta	RAB41	chrX	70277172	70290002
RAB42_chr1_28587265_28600449	0/0	a0001	218	374	90	79	144	17	44	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	a0002	218	2	1	0	0	1	0	copy fasta	RAB42	chr1	28587265	28600449
RAB42_chr1_28587265_28600449	0/0	a0003	218	1	0	1	0	0	0	copy fasta	RAB42	chr1	28587265	28600449