JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAB42_chr1_28587265_28600449	0/0	a0004	218	1	1	0	0	0	0	copy fasta	RAB42	chr1	28587265	28600449
RAB43_chr3_129082572_129126804	1/1	a0001	212	302	83	61	116	10	30	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	a0002	212	1	1	0	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB43_chr3_129082572_129126804	0/0	a0003	212	1	0	1	0	0	0	copy fasta	RAB43	chr3	129082572	129126804
RAB44_chr6_36692826_36738184	1/0	a0001	1021	330	37	70	158	17	47	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0002	1027	43	28	0	15	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/1	a0003	1027	20	9	6	4	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0004	1021	6	0	0	6	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0005	1027	3	3	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0006	1027	3	3	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0007	1033	3	3	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0008	1021	2	0	0	2	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0009	1021	2	0	0	2	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0010	1027	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0011	1027	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0012	1033	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0013	1033	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0014	1027	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0015	1021	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0016	1021	1	0	0	0	1	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0017	712	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0018	1021	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0019	1021	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0020	1021	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0021	1021	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0022	1021	1	0	0	1	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0023	1027	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0024	1021	1	0	0	0	0	1	copy fasta	RAB44	chr6	36692826	36738184
RAB44_chr6_36692826_36738184	0/0	a0025	1027	1	1	0	0	0	0	copy fasta	RAB44	chr6	36692826	36738184
RAB4A_chr1_229266111_229310894	1/1	a0001	218	400	94	74	174	12	44	copy fasta	RAB4A	chr1	229266111	229310894
RAB4B_chr19_40773247_40801942	1/1	a0001	213	382	90	58	174	16	42	copy fasta	RAB4B	chr19	40773247	40801942
RAB4B_chr19_40773247_40801942	0/0	a0002	213	1	0	0	1	0	0	copy fasta	RAB4B	chr19	40773247	40801942
RAB4B_chr19_40773247_40801942	0/0	a0003	213	1	0	0	1	0	0	copy fasta	RAB4B	chr19	40773247	40801942
RAB5A_chr3_19942097_19990175	1/1	a0001	215	348	90	66	130	16	44	copy fasta	RAB5A	chr3	19942097	19990175
RAB5B_chr12_55969078_56001683	1/1	a0001	215	382	80	82	170	16	32	copy fasta	RAB5B	chr12	55969078	56001683
RAB5C_chr17_42119979_42159989	1/1	a0001	216	304	92	54	104	16	36	copy fasta	RAB5C	chr17	42119979	42159989
RAB5C_chr17_42119979_42159989	0/0	a0002	216	2	2	0	0	0	0	copy fasta	RAB5C	chr17	42119979	42159989
RAB5IF_chr20_36600779_36617557	1/1	a0001	129	397	94	80	171	14	36	copy fasta	RAB5IF	chr20	36600779	36617557
RAB5IF_chr20_36600779_36617557	0/0	a0002	129	1	0	0	1	0	0	copy fasta	RAB5IF	chr20	36600779	36617557
RAB6A_chr11_73670638_73766074	1/1	a0001	208	354	90	56	152	12	42	copy fasta	RAB6A	chr11	73670638	73766074
RAB6B_chr3_133819235_133900882	1/1	a0001	208	386	94	72	160	18	40	copy fasta	RAB6B	chr3	133819235	133900882
RAB6C_chr2_129974666_129987738	0/1	a0001	254	199	30	38	102	5	23	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	1/0	a0002	254	121	30	21	46	4	19	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	a0003	254	47	19	0	26	0	2	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	a0004	254	12	10	2	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	a0005	254	11	0	5	5	1	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	a0006	254	8	8	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	a0007	254	2	0	0	2	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	a0008	254	1	1	0	0	0	0	copy fasta	RAB6C	chr2	129974666	129987738
RAB6C_chr2_129974666_129987738	0/0	a0009	254	1	0	0	1	0	0	copy fasta	RAB6C	chr2	129974666	129987738