JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAB6D_chr2_131355492_131369168	1/1	a0001	254	401	81	74	188	16	40	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	a0002	254	10	9	0	1	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	a0003	254	6	6	0	0	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	a0004	254	2	0	0	2	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB6D_chr2_131355492_131369168	0/0	a0005	254	1	0	0	1	0	0	copy fasta	RAB6D	chr2	131355492	131369168
RAB7A_chr3_128721183_128819798	1/1	a0001	207	314	82	70	108	16	36	copy fasta	RAB7A	chr3	128721183	128819798
RAB7B_chr1_205971740_206008395	1/1	a0001	199	330	98	74	98	16	42	copy fasta	RAB7B	chr1	205971740	206008395
RAB8A_chr19_16106889_16139234	1/1	a0001	207	390	90	74	166	12	46	copy fasta	RAB8A	chr19	16106889	16139234
RAB8B_chr15_63184606_63272776	1/1	a0001	207	372	92	70	160	12	36	copy fasta	RAB8B	chr15	63184606	63272776
RAB9A_chrX_13684128_13715504	1/1	a0001	201	334	72	60	157	11	32	copy fasta	RAB9A	chrX	13684128	13715504
RAB9B_chrX_103817327_103837257	1/1	a0001	201	331	74	57	153	13	32	copy fasta	RAB9B	chrX	103817327	103837257
RABAC1_chr19_41951683_41964321	1/1	a0001	185	368	78	76	160	16	36	copy fasta	RABAC1	chr19	41951683	41964321
RABEP1_chr17_5277284_5391340	1/1	a0001	862	346	91	61	143	14	35	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	a0002	862	4	0	3	0	0	1	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	a0003	862	1	0	0	1	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP1_chr17_5277284_5391340	0/0	a0004	862	1	1	0	0	0	0	copy fasta	RABEP1	chr17	5277284	5391340
RABEP2_chr16_28899421_28930238	1/1	a0001	569	336	60	63	161	14	36	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	a0002	569	27	26	1	0	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	a0003	569	1	0	0	1	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	a0004	569	1	1	0	0	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEP2_chr16_28899421_28930238	0/0	a0005	569	1	1	0	0	0	0	copy fasta	RABEP2	chr16	28899421	28930238
RABEPK_chr9_125195542_125239161	1/1	a0001	372	338	72	59	157	11	37	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	a0002	372	18	5	7	0	2	4	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	a0003	372	14	12	2	0	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	a0004	372	13	1	2	9	0	1	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	a0005	372	2	0	0	2	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	a0006	372	1	0	0	1	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	a0007	372	1	0	0	1	0	0	copy fasta	RABEPK	chr9	125195542	125239161
RABEPK_chr9_125195542_125239161	0/0	a0008	372	1	0	0	0	1	0	copy fasta	RABEPK	chr9	125195542	125239161
RABGAP1L_chr1_174154520_175000308	0/0	a0001	1051	252	55	44	106	14	33	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	a0002	1051	12	12	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	a0003	1051	3	0	0	3	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	a0004	1051	1	0	0	1	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	a0005	1051	1	1	0	0	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	a0006	1051	1	0	0	1	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	a0007	1051	1	0	0	1	0	0	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1L_chr1_174154520_175000308	0/0	a0008	1051	1	0	0	0	0	1	copy fasta	RABGAP1L	chr1	174154520	175000308
RABGAP1_chr9_122936020_123109866	1/1	a0001	1069	251	72	52	100	10	15	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	a0002	1069	5	0	0	5	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	a0003	1069	1	0	0	1	0	0	copy fasta	RABGAP1	chr9	122936020	123109866
RABGAP1_chr9_122936020_123109866	0/0	a0004	1069	1	0	0	0	0	1	copy fasta	RABGAP1	chr9	122936020	123109866
RABGEF1_chr7_66735733_66816464	1/1	a0001	491	398	90	72	184	12	38	copy fasta	RABGEF1	chr7	66735733	66816464
RABGEF1_chr7_66735733_66816464	0/0	a0002	491	2	2	0	0	0	0	copy fasta	RABGEF1	chr7	66735733	66816464
RABGGTA_chr14_24260538_24276597	0/1	a0001	567	264	74	44	108	9	28	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	1/0	a0002	567	146	16	29	76	7	17	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	a0003	567	1	0	1	0	0	0	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	a0004	567	1	0	0	1	0	0	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	a0005	567	1	0	0	1	0	0	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTA_chr14_24260538_24276597	0/0	a0006	567	1	0	0	0	0	1	copy fasta	RABGGTA	chr14	24260538	24276597
RABGGTB_chr1_75781256_75800086	1/1	a0001	331	402	97	74	167	14	48	copy fasta	RABGGTB	chr1	75781256	75800086