JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RABGGTB_chr1_75781256_75800086	0/0	a0002	331	1	1	0	0	0	0	copy fasta	RABGGTB	chr1	75781256	75800086
RABGGTB_chr1_75781256_75800086	0/0	a0003	331	1	0	0	1	0	0	copy fasta	RABGGTB	chr1	75781256	75800086
RABIF_chr1_202873282_202894149	1/1	a0001	123	424	88	78	200	16	40	copy fasta	RABIF	chr1	202873282	202894149
RABIF_chr1_202873282_202894149	0/0	a0002	123	2	2	0	0	0	0	copy fasta	RABIF	chr1	202873282	202894149
RABL2A_chr2_113622266_113648392	1/1	a0001	229	373	76	69	168	17	41	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	a0002	111	41	0	5	31	1	4	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	a0003	229	7	7	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	a0004	229	6	6	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	a0005	229	4	4	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	a0006	229	3	3	0	0	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	a0007	229	1	0	0	0	0	1	copy fasta	RABL2A	chr2	113622266	113648392
RABL2A_chr2_113622266_113648392	0/0	a0008	229	1	0	0	1	0	0	copy fasta	RABL2A	chr2	113622266	113648392
RABL2B_chr22_50762506_50788636	1/1	a0001	229	469	93	82	230	18	44	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	a0002	175	2	0	0	2	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	a0003	229	2	2	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	a0004	229	2	2	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL2B_chr22_50762506_50788636	0/0	a0005	229	1	1	0	0	0	0	copy fasta	RABL2B	chr22	50762506	50788636
RABL3_chr3_120679938_120747516	1/1	a0001	236	352	76	68	152	14	40	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	a0002	236	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL3_chr3_120679938_120747516	0/0	a0003	236	1	1	0	0	0	0	copy fasta	RABL3	chr3	120679938	120747516
RABL6_chr9_136802948_136846187	0/1	a0001	729	230	53	44	99	7	26	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	1/0	a0002	729	74	17	23	24	5	4	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	a0003	729	8	0	0	6	0	2	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	a0004	729	4	0	0	4	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	a0005	729	3	3	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	a0006	729	2	0	0	0	0	2	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	a0007	729	2	1	1	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	a0008	729	1	0	0	1	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	a0009	729	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	a0010	729	1	0	0	0	0	1	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	a0011	729	1	0	0	0	0	1	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	a0012	729	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	a0013	729	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RABL6_chr9_136802948_136846187	0/0	a0014	729	1	1	0	0	0	0	copy fasta	RABL6	chr9	136802948	136846187
RAC1_chr7_6369527_6408967	1/1	a0001	192	391	93	72	166	14	44	copy fasta	RAC1	chr7	6369527	6408967
RAC1_chr7_6369527_6408967	0/0	a0002	192	1	1	0	0	0	0	copy fasta	RAC1	chr7	6369527	6408967
RAC2_chr22_37220270_37249269	1/1	a0001	192	447	98	76	207	18	46	copy fasta	RAC2	chr22	37220270	37249269
RAC2_chr22_37220270_37249269	0/0	a0002	192	1	0	0	1	0	0	copy fasta	RAC2	chr22	37220270	37249269
RAC3_chr17_82026678_82039204	1/1	a0001	192	404	94	76	170	14	48	copy fasta	RAC3	chr17	82026678	82039204
RACGAP1_chr12_49984162_50030494	1/1	a0001	632	319	90	68	127	4	28	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	a0002	632	3	3	0	0	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	a0003	632	1	0	0	1	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACGAP1_chr12_49984162_50030494	0/0	a0004	632	1	1	0	0	0	0	copy fasta	RACGAP1	chr12	49984162	50030494
RACK1_chr5_181231897_181248906	1/1	a0001	317	428	100	74	192	16	44	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	a0002	317	1	0	0	1	0	0	copy fasta	RACK1	chr5	181231897	181248906
RACK1_chr5_181231897_181248906	0/0	a0003	317	1	0	0	1	0	0	copy fasta	RACK1	chr5	181231897	181248906
RAD17_chr5_69364818_69419801	0/1	a0001	670	264	68	48	118	6	23	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	a0002	670	76	2	19	45	2	8	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	a0003	670	8	8	0	0	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	a0004	670	3	0	2	0	0	1	copy fasta	RAD17	chr5	69364818	69419801