JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATF4_chr22_39515562_39527683	0/0	a0014	351	1	1	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	a0015	351	1	0	1	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF5_chr19_49924205_49938935	0/1	a0001	282	296	83	49	131	8	24	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	1/0	a0002	282	141	12	30	68	4	26	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	a0003	282	1	1	0	0	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	a0004	282	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	a0005	282	1	0	1	0	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	a0006	282	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	a0007	282	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	a0008	282	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	a0009	282	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF6B_chr6_32110264_32133246	0/1	a0001	703	424	89	78	196	17	43	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	a0002	703	3	0	1	0	1	1	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	a0003	703	2	1	0	0	0	1	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	a0004	703	1	1	0	0	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	a0005	703	1	0	1	0	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	a0006	703	1	0	0	0	0	1	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	a0007	703	1	1	0	0	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	a0008	703	1	1	0	0	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	a0009	703	1	0	0	0	0	1	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	a0010	703	1	0	0	1	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	a0011	703	1	0	0	1	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	a0012	703	1	1	0	0	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	a0013	703	1	0	0	0	0	1	copy fasta	ATF6B	chr6	32110264	32133246
ATF6_chr1_161761320_161969070	1/1	a0001	670	172	45	32	56	8	29	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	a0002	670	75	4	21	46	1	3	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	a0003	670	72	1	11	51	5	4	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	a0004	670	10	10	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	a0005	670	1	0	1	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	a0006	670	1	0	0	1	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	a0007	670	1	0	1	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF7IP2_chr16_10381061_10488638	1/0	a0001	682	169	42	40	60	6	20	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/1	a0002	681	150	27	27	74	6	15	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	a0003	681	35	14	1	19	0	1	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	a0004	682	11	0	0	11	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	a0005	681	3	0	0	3	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	a0006	681	1	0	0	0	0	1	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	a0007	681	1	1	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	a0008	677	1	0	0	1	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	a0009	681	1	1	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	a0010	682	1	0	0	1	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	a0011	682	1	1	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	a0012	682	1	0	0	1	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	a0013	682	1	0	0	0	0	1	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP_chr12_14360682_14507930	0/0	a0001	1270	135	25	23	63	4	20	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/1	a0002	1270	102	10	22	52	6	11	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	1/0	a0003	1270	72	45	9	12	2	3	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	a0004	1270	9	2	6	0	1	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	a0005	1270	9	0	2	3	0	4	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	a0006	1270	6	6	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930