JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAD17_chr5_69364818_69419801	0/0	a0005	670	2	2	0	0	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	a0006	670	1	0	1	0	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	a0007	670	1	0	0	1	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	a0008	670	1	1	0	0	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	a0009	670	1	0	0	1	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	a0010	670	1	0	0	1	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD17_chr5_69364818_69419801	0/0	a0011	670	1	1	0	0	0	0	copy fasta	RAD17	chr5	69364818	69419801
RAD18_chr3_8872075_8968472	0/1	a0001	495	175	59	38	53	2	22	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	1/0	a0002	495	149	22	19	97	4	6	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	a0003	495	8	8	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	a0004	495	5	0	0	5	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	a0005	495	2	2	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	a0006	495	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	a0007	495	1	0	0	1	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	a0008	495	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	a0009	495	1	0	0	0	0	1	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	a0010	495	1	1	0	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	a0011	495	1	0	0	1	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	a0012	495	1	0	1	0	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	a0013	495	1	0	0	0	0	1	copy fasta	RAD18	chr3	8872075	8968472
RAD18_chr3_8872075_8968472	0/0	a0014	495	1	0	0	1	0	0	copy fasta	RAD18	chr3	8872075	8968472
RAD1_chr5_34900260_34920504	1/1	a0001	282	405	93	72	184	16	38	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	a0002	282	19	0	4	9	1	5	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	a0003	282	3	0	1	0	1	1	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	a0004	282	3	0	3	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	a0005	108	1	1	0	0	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD1_chr5_34900260_34920504	0/0	a0006	282	1	0	0	1	0	0	copy fasta	RAD1	chr5	34900260	34920504
RAD21L1_chr20_1221044_1260876	1/0	a0001	555	172	9	35	100	8	19	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/1	a0002	555	143	56	28	33	8	17	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	a0003	555	15	8	5	1	1	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	a0004	555	14	0	4	10	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	a0005	555	8	5	1	0	1	1	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	a0006	555	4	1	0	3	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	a0007	555	2	1	1	0	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	a0008	555	2	2	0	0	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	a0009	555	1	1	0	0	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	a0010	555	1	1	0	0	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	a0011	555	1	0	0	1	0	0	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21L1_chr20_1221044_1260876	0/0	a0012	555	1	0	0	0	0	1	copy fasta	RAD21L1	chr20	1221044	1260876
RAD21_chr8_116840934_116879776	1/1	a0001	631	427	92	74	195	18	46	copy fasta	RAD21	chr8	116840934	116879776
RAD21_chr8_116840934_116879776	0/0	a0002	631	1	0	0	1	0	0	copy fasta	RAD21	chr8	116840934	116879776
RAD23A_chr19_12940862_12958642	1/1	a0001	363	325	76	71	126	13	37	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	a0002	363	34	15	6	10	3	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	a0003	363	1	0	1	0	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	a0004	363	1	0	0	0	0	1	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	a0005	363	1	0	0	1	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	a0006	363	1	0	0	1	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23A_chr19_12940862_12958642	0/0	a0007	363	1	1	0	0	0	0	copy fasta	RAD23A	chr19	12940862	12958642
RAD23B_chr9_107278279_107337189	1/0	a0001	409	273	96	49	84	13	30	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/1	a0002	409	71	1	19	39	1	10	copy fasta	RAD23B	chr9	107278279	107337189