JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAD9B_chr12_110497331_110538556	0/0	a0005	417	1	0	0	1	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RADIL_chr7_4792055_4888716	0/1	a0001	1075	98	16	20	45	7	9	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0002	1075	49	1	8	25	5	10	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0003	1075	45	43	0	0	2	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0004	1075	17	1	0	5	0	11	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0005	1075	15	1	7	1	1	5	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0006	1078	6	3	3	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0007	1075	6	0	0	6	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0008	1075	6	1	1	4	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0009	1075	5	0	1	4	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0010	1075	4	2	2	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0011	1078	4	4	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0012	1078	3	3	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0013	1075	3	2	1	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0014	1078	3	0	3	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0015	1075	2	2	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0016	1075	1	0	0	1	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0017	1075	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0018	1078	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0019	1078	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0020	1075	1	0	0	0	1	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0021	1075	1	0	1	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0022	1075	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0023	1075	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0024	1075	1	0	0	1	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	1/0	a0025	1075	1	0	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0026	1075	1	0	0	1	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0027	1081	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0028	1078	1	0	0	0	0	1	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0029	1075	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0030	1075	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0031	1075	1	0	0	1	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0032	1075	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0033	1075	1	0	0	1	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0034	1075	1	0	1	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0035	1075	1	0	0	0	0	1	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0036	1075	1	0	0	1	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0037	1075	1	0	0	0	0	1	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0038	1075	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0039	1075	1	0	1	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0040	1075	1	0	1	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADIL_chr7_4792055_4888716	0/0	a0041	1075	1	1	0	0	0	0	copy fasta	RADIL	chr7	4792055	4888716
RADX_chrX_106606978_106684439	1/1	a0001	855	169	39	26	77	7	18	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	a0002	855	31	30	1	0	0	0	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	a0003	855	2	0	0	2	0	0	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	a0004	855	1	1	0	0	0	0	copy fasta	RADX	chrX	106606978	106684439
RADX_chrX_106606978_106684439	0/0	a0005	855	1	0	0	1	0	0	copy fasta	RADX	chrX	106606978	106684439
RAE1_chr20_57346255_57384202	1/1	a0001	368	342	96	62	130	16	36	copy fasta	RAE1	chr20	57346255	57384202
RAET1E_chr6_149878179_149903113	0/0	a0001	263	112	6	13	79	3	11	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/1	a0002	263	104	9	27	53	5	9	copy fasta	RAET1E	chr6	149878179	149903113