JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAI2_chrX_17795049_17866298	0/0	a0003	530	1	1	0	0	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	a0004	12	1	0	0	1	0	0	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	0/0	a0005	12	1	0	0	1	0	0	copy fasta	RAI2	chrX	17795049	17866298
RALA_chr7_39618572_39713120	1/1	a0001	206	366	88	70	158	12	36	copy fasta	RALA	chr7	39618572	39713120
RALBP1_chr18_9470513_9543114	1/1	a0001	655	351	93	62	149	18	27	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	a0002	655	4	0	4	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	a0003	655	3	0	0	2	0	1	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	a0004	655	2	2	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	a0005	655	1	1	0	0	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALBP1_chr18_9470513_9543114	0/0	a0006	655	1	0	0	1	0	0	copy fasta	RALBP1	chr18	9470513	9543114
RALB_chr2_120247852_120299710	1/1	a0001	206	358	86	66	148	16	40	copy fasta	RALB	chr2	120247852	120299710
RALGAPA1_chr14_35533356_35814295	0/0	a0001	2542	142	52	13	54	2	21	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	1/1	a0002	2542	91	20	20	37	1	11	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	a0003	2542	12	0	1	7	0	4	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	a0004	2542	8	0	0	8	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	a0005	2542	7	1	3	0	1	2	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	a0006	2542	2	2	0	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	a0007	2542	2	1	1	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	a0008	2542	2	0	1	0	0	1	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	a0009	2542	1	1	0	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	a0010	2542	1	0	1	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	a0011	2542	1	0	0	0	0	1	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	a0012	2542	1	0	0	1	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	a0013	2542	1	1	0	0	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA1_chr14_35533356_35814295	0/0	a0014	2542	1	0	0	1	0	0	copy fasta	RALGAPA1	chr14	35533356	35814295
RALGAPA2_chr20_20384530_20717644	1/1	a0001	1873	90	39	10	31	0	8	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	a0002	1873	23	1	1	21	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	a0003	1873	5	5	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	a0004	1873	2	0	2	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	a0005	1873	1	1	0	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPA2_chr20_20384530_20717644	0/0	a0006	1873	1	0	1	0	0	0	copy fasta	RALGAPA2	chr20	20384530	20717644
RALGAPB_chr20_38467843_38583858	1/1	a0001	1494	210	80	40	61	6	21	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	a0002	1494	3	3	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	a0003	1494	1	1	0	0	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	a0004	1494	1	0	0	1	0	0	copy fasta	RALGAPB	chr20	38467843	38583858
RALGAPB_chr20_38467843_38583858	0/0	a0005	1494	1	0	0	0	0	1	copy fasta	RALGAPB	chr20	38467843	38583858
RALGDS_chr9_133092722_133126240	1/1	a0001	914	416	94	85	175	15	45	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	a0002	914	2	2	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	a0003	914	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	a0004	914	1	0	0	1	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	a0005	920	1	1	0	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	a0006	924	1	0	0	0	0	1	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	a0007	914	1	0	0	0	1	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGDS_chr9_133092722_133126240	0/0	a0008	914	1	0	1	0	0	0	copy fasta	RALGDS	chr9	133092722	133126240
RALGPS1_chr9_126909782_127228166	1/1	a0001	557	258	80	54	86	14	22	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS1_chr9_126909782_127228166	0/0	a0002	557	18	0	0	16	0	2	copy fasta	RALGPS1	chr9	126909782	127228166
RALGPS2_chr1_178720244_178926840	1/1	a0001	583	305	85	56	134	6	22	copy fasta	RALGPS2	chr1	178720244	178926840
RALGPS2_chr1_178720244_178926840	0/0	a0002	583	1	1	0	0	0	0	copy fasta	RALGPS2	chr1	178720244	178926840
RALYL_chr8_84178274_84926844	0/0	a0001	291	82	54	10	6	6	6	copy fasta	RALYL	chr8	84178274	84926844
RALY_chr20_33988911_34089884	0/1	a0001	307	168	61	28	50	8	20	copy fasta	RALY	chr20	33988911	34089884