JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RALY_chr20_33988911_34089884	1/0	a0002	306	83	20	18	37	2	5	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	a0003	307	22	0	2	12	2	6	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	a0004	306	4	1	3	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	a0005	307	3	0	0	3	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	a0006	305	3	0	0	3	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	a0007	307	2	2	0	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	a0008	306	2	0	0	0	0	2	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	a0009	307	1	0	1	0	0	0	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	a0010	307	1	0	0	0	0	1	copy fasta	RALY	chr20	33988911	34089884
RALY_chr20_33988911_34089884	0/0	a0011	306	1	0	0	1	0	0	copy fasta	RALY	chr20	33988911	34089884
RAMACL_chr6_166578009_166591678	0/0	a0000	0	43	40	3	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	1/1	a0001	118	384	52	71	198	17	44	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	a0002	118	8	0	0	8	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	a0003	110	6	0	6	0	0	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMACL_chr6_166578009_166591678	0/0	a0004	118	1	0	0	0	1	0	copy fasta	RAMACL	chr6	166578009	166591678
RAMAC_chr15_82981210_82996057	1/1	a0001	118	414	85	77	188	18	44	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	a0002	118	22	15	5	0	0	2	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	a0003	118	1	0	0	1	0	0	copy fasta	RAMAC	chr15	82981210	82996057
RAMAC_chr15_82981210_82996057	0/0	a0004	118	1	0	0	1	0	0	copy fasta	RAMAC	chr15	82981210	82996057
RAMP1_chr2_237854623_237917106	1/1	a0001	148	403	98	74	168	17	44	copy fasta	RAMP1	chr2	237854623	237917106
RAMP1_chr2_237854623_237917106	0/0	a0002	148	1	0	0	0	1	0	copy fasta	RAMP1	chr2	237854623	237917106
RAMP2_chr17_42756227_42768041	1/1	a0001	175	353	94	78	120	16	43	copy fasta	RAMP2	chr17	42756227	42768041
RAMP2_chr17_42756227_42768041	0/0	a0002	175	1	0	0	0	0	1	copy fasta	RAMP2	chr17	42756227	42768041
RAMP3_chr7_45152791_45189250	1/1	a0001	148	376	82	64	170	16	42	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	a0002	148	33	1	4	22	0	6	copy fasta	RAMP3	chr7	45152791	45189250
RAMP3_chr7_45152791_45189250	0/0	a0003	148	11	9	2	0	0	0	copy fasta	RAMP3	chr7	45152791	45189250
RANBP10_chr16_67718070_67811560	1/1	a0001	620	150	78	34	22	2	12	copy fasta	RANBP10	chr16	67718070	67811560
RANBP10_chr16_67718070_67811560	0/0	a0002	620	2	0	0	0	0	2	copy fasta	RANBP10	chr16	67718070	67811560
RANBP17_chr5_170857018_171305015	0/0	a0001	1088	177	58	39	56	10	14	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	a0002	1088	3	3	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	a0003	1088	1	1	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	a0004	1088	1	0	0	0	0	1	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	a0005	1088	1	0	0	1	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	a0006	1088	1	1	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	a0007	1088	1	0	1	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	a0008	1088	1	1	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	a0009	1088	1	0	0	1	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	a0010	1088	1	1	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	a0011	1088	1	0	0	0	0	1	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	a0012	1088	1	0	0	1	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	a0013	1088	1	1	0	0	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP17_chr5_170857018_171305015	0/0	a0014	1088	1	0	0	1	0	0	copy fasta	RANBP17	chr5	170857018	171305015
RANBP1_chr22_20111104_20132355	1/1	a0001	278	429	98	70	195	16	48	copy fasta	RANBP1	chr22	20111104	20132355
RANBP1_chr22_20111104_20132355	0/0	a0002	69	2	0	0	2	0	0	copy fasta	RANBP1	chr22	20111104	20132355
RANBP1_chr22_20111104_20132355	0/0	a0003	278	1	0	0	1	0	0	copy fasta	RANBP1	chr22	20111104	20132355
RANBP2_chr2_108714482_108790809	1/1	a0001	3224	172	61	32	43	13	21	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0002	3224	10	2	2	6	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0003	3224	8	7	0	0	0	1	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0004	3224	7	0	1	6	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0005	3224	5	0	0	3	0	2	copy fasta	RANBP2	chr2	108714482	108790809